Variant report
| Variant | rs11052382 |
|---|---|
| Chromosome Location | chr12:33169664-33169665 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs10844443 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs10844444 | 0.83[AMR][1000 genomes];0.85[EUR][1000 genomes] |
| rs11052397 | 0.91[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11052403 | 0.84[EUR][1000 genomes] |
| rs11052410 | 0.92[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs11513272 | 0.93[EUR][1000 genomes] |
| rs12367772 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12368488 | 0.93[AMR][1000 genomes];0.93[EUR][1000 genomes] |
| rs12369282 | 0.83[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs12369958 | 0.86[EUR][1000 genomes] |
| rs12370292 | 0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes] |
| rs12424905 | 0.81[AMR][1000 genomes];0.87[EUR][1000 genomes] |
| rs1392334 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs2133676 | 0.81[AMR][1000 genomes];0.83[EUR][1000 genomes] |
| rs35308520 | 1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes] |
| rs4931674 | 0.81[AMR][1000 genomes];0.84[EUR][1000 genomes] |
| rs4931677 | 0.90[AMR][1000 genomes];0.91[EUR][1000 genomes] |
| rs4931681 | 0.87[EUR][1000 genomes] |
| rs59704095 | 0.90[ASN][1000 genomes] |
| rs61928782 | 0.92[AMR][1000 genomes];0.95[EUR][1000 genomes] |
| rs61928784 | 0.88[AMR][1000 genomes];0.95[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv530421 | chr12:32825335-33465991 | Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 38 gene(s) | inside rSNPs | diseases |
| 2 | nsv832367 | chr12:33063644-33298967 | Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 6 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039909 | chr12:33132909-33244419 | Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| 4 | nsv1053849 | chr12:33132909-33279169 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 4 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:33168600-33170000 | ZNF genes & repeats | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
