Variant report

Variant	rs11052480
Chromosome Location	chr12:33305415-33305416
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 103 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10047666	1.00[CEU][hapmap];0.90[MEX][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs10772040	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs10844483	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11052501	0.82[AFR][1000 genomes]
rs11052502	0.82[AFR][1000 genomes]
rs11052503	0.82[AFR][1000 genomes]
rs12297690	1.00[CEU][hapmap];0.90[MEX][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs1392331	1.00[CEU][hapmap];1.00[MEX][hapmap]
rs1961179	0.82[AFR][1000 genomes]
rs1961180	0.82[AFR][1000 genomes]
rs2120967	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs59547881	0.94[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:91 , 50 per page) page: 1 2

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1044931	chr12:33179957-33307362	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	esv1815763	chr12:33271892-33306863	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv668	chr12:33281675-33314883	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv1048692	chr12:33288946-33307362	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv1053524	chr12:33288946-33323351	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv1823776	chr12:33289821-33305855	Enhancers Weak transcription ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv558191	chr12:33289821-33306312	ZNF genes & repeats Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv558192	chr12:33289821-33308928	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	nsv558193	chr12:33289821-33309797	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv1054281	chr12:33290645-33307066	ZNF genes & repeats Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1036012	chr12:33290645-33309059	Weak transcription ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv2654108	chr12:33293708-33309148	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
14	nsv8943	chr12:33293884-33307568	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
15	esv1819286	chr12:33293907-33306312	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
16	esv1822055	chr12:33293907-33306312	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
17	nsv1045469	chr12:33293907-33307362	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
18	nsv511494	chr12:33293907-33308022	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
19	esv2760238	chr12:33293907-33315658	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
20	nsv558195	chr12:33294037-33305647	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
21	esv1823941	chr12:33294037-33305855	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
22	esv1815730	chr12:33294037-33306312	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
23	esv1816510	chr12:33294037-33306312	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
24	nsv558196	chr12:33294037-33306312	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
25	nsv437740	chr12:33294037-33312197	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
26	nsv1045344	chr12:33294486-33306953	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
27	nsv1052212	chr12:33294486-33307362	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
28	nsv1037198	chr12:33294499-33307362	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
29	nsv1051333	chr12:33294533-33307362	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
30	nsv1036284	chr12:33294533-33308851	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
31	esv3495907	chr12:33296467-33307451	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
32	esv3431370	chr12:33296516-33307387	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
33	nsv498786	chr12:33296553-33307373	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
34	esv3495918	chr12:33296554-33307373	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
35	esv16755	chr12:33299311-33307468	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
36	esv1820916	chr12:33299791-33307362	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
37	esv2422106	chr12:33299791-33307374	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
38	nsv826314	chr12:33300890-33307336	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
39	esv1818714	chr12:33300976-33307063	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
40	esv1823043	chr12:33300976-33307063	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
41	nsv826315	chr12:33301117-33307336	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
42	nsv558201	chr12:33301157-33305647	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
43	esv1816489	chr12:33301157-33305855	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
44	esv1817088	chr12:33301157-33305855	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
45	esv1817292	chr12:33301157-33305855	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
46	esv1817690	chr12:33301157-33305855	Weak transcription ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases
47	esv1818323	chr12:33301157-33305855	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
48	esv1818709	chr12:33301157-33305855	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
49	esv1818771	chr12:33301157-33305855	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases
50	esv1819568	chr12:33301157-33305855	ZNF genes & repeats Weak transcription	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33305000-33306200	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links