Variant report

Variant	rs11052605
Chromosome Location	chr12:33457218-33457219
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:33448730..33452816-chr12:33453683..33457661,3	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10743818	0.95[CEU][hapmap];0.88[JPT][hapmap]
rs10772059	0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10772075	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap]
rs10844573	0.84[EUR][1000 genomes]
rs10844579	0.95[CEU][hapmap]
rs10844581	0.89[JPT][hapmap]
rs10844583	0.89[JPT][hapmap]
rs10844588	0.88[JPT][hapmap]
rs10844589	0.89[JPT][hapmap]
rs11052679	0.89[JPT][hapmap]
rs11610318	0.85[CHB][hapmap]
rs11829626	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs12579354	1.00[CEU][hapmap];0.84[EUR][1000 genomes]
rs1905415	1.00[CEU][hapmap];0.85[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs1905416	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap];0.84[EUR][1000 genomes]
rs1905420	1.00[CEU][hapmap];0.86[CHB][hapmap];0.88[JPT][hapmap]
rs1905428	0.89[JPT][hapmap]
rs1905429	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1905431	0.89[JPT][hapmap]
rs1994169	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs1994170	1.00[CEU][hapmap];0.86[CHB][hapmap];0.89[JPT][hapmap];0.84[EUR][1000 genomes]
rs2128891	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs2389195	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs2389197	0.88[JPT][hapmap]
rs2892700	0.95[CEU][hapmap];0.89[JPT][hapmap]
rs2892702	0.95[CEU][hapmap];0.89[JPT][hapmap]
rs7309981	0.89[JPT][hapmap]
rs7972449	0.81[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530421	chr12:32825335-33465991	Strong transcription Weak transcription Genic enhancers Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv1037459	chr12:33310703-33905662	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
3	nsv541459	chr12:33310703-33905662	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
4	nsv832368	chr12:33368962-33588498	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv1035988	chr12:33399053-33699363	Bivalent Enhancer Enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1047926	chr12:33427153-33493458	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:33449400-33459600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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