Variant report

Variant	rs11053521
Chromosome Location	chr12:10100023-10100024
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs11838264	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044587	chr12:10029514-10123414	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523050	chr12:10031880-10124373	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898755	chr12:10069302-10186284	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10096200-10101400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr12:10096400-10100800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr12:10096400-10102200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr12:10096400-10104800	Enhancers	Primary monocytes fromperipheralblood	blood
5	chr12:10097400-10100600	Weak transcription	Primary T helper cells fromperipheralblood	blood
6	chr12:10097400-10100600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr12:10097400-10100800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr12:10097400-10100800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr12:10097400-10100800	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr12:10097400-10101000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
11	chr12:10097600-10100400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr12:10097600-10101000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
13	chr12:10097600-10101000	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr12:10097800-10101200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr12:10098400-10103400	Enhancers	Primary T cells from cord blood	blood
16	chr12:10098800-10100400	Weak transcription	Primary hematopoietic stem cells	blood
17	chr12:10099400-10100400	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr12:10099400-10104800	Enhancers	Primary hematopoietic stem cells short term culture	blood
19	chr12:10099600-10102400	Enhancers	Primary B cells from peripheral blood	blood
20	chr12:10099600-10102400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr12:10099800-10100400	Enhancers	GM12878-XiMat	blood
22	chr12:10099800-10102000	Enhancers	Primary B cells from cord blood	blood
23	chr12:10100000-10100600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links