Variant report

Variant	rs11053901
Chromosome Location	chr12:10843836-10843837
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:10842762..10844368-chr12:10875417..10878208,2	K562	blood:
2	chr12:10843544..10845566-chr12:10870998..10873055,2	K562	blood:
3	chr12:10839294..10841804-chr12:10842599..10845127,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000060138	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12578723	0.83[CEU][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs2120602	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832329	chr12:10677094-10845946	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
2	nsv1050613	chr12:10809805-10844399	Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10834600-10853800	Weak transcription	Pancreas	Pancrea
2	chr12:10834800-10848600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr12:10836800-10851200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr12:10839800-10849800	Weak transcription	A549	lung
5	chr12:10840000-10848000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr12:10840600-10848000	Weak transcription	Psoas Muscle	Psoas
7	chr12:10840600-10848600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr12:10840800-10847400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr12:10840800-10848000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
10	chr12:10840800-10848000	Weak transcription	Left Ventricle	heart
11	chr12:10841400-10847400	Weak transcription	HSMM	muscle
12	chr12:10841800-10846400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr12:10842000-10848600	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr12:10842000-10848600	Weak transcription	Sigmoid Colon	Sigmoid Colon
15	chr12:10842000-10866000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr12:10842200-10849000	Weak transcription	HMEC	breast
17	chr12:10842200-10849200	Weak transcription	Colon Smooth Muscle	Colon
18	chr12:10842600-10848400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr12:10842800-10846200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr12:10842800-10848600	Weak transcription	NHDF-Ad	bronchial
21	chr12:10842800-10850800	Weak transcription	Aorta	Aorta
22	chr12:10843000-10847400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr12:10843000-10847800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
24	chr12:10843000-10847800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
25	chr12:10843000-10850800	Weak transcription	Ovary	ovary
26	chr12:10843000-10853600	Weak transcription	Right Ventricle	heart
27	chr12:10843200-10849200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr12:10843200-10849400	Weak transcription	Primary hematopoietic stem cells	blood
29	chr12:10843400-10844000	Enhancers	Skeletal Muscle Female	skeletal muscle
30	chr12:10843400-10845400	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr12:10843400-10849800	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr12:10843600-10844600	Enhancers	HSMMtube	muscle
33	chr12:10843600-10849800	Weak transcription	Hela-S3	cervix
34	chr12:10843800-10844000	Enhancers	Fetal Muscle Leg	muscle

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