Variant report

Variant	rs11054521
Chromosome Location	chr12:7725074-7725075
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10505732	0.94[ASN][1000 genomes]
rs10772515	0.91[ASN][1000 genomes]
rs10845427	0.86[ASN][1000 genomes]
rs10845432	0.92[ASN][1000 genomes]
rs11054516	0.98[ASN][1000 genomes]
rs11054527	0.99[ASN][1000 genomes]
rs11054533	0.98[ASN][1000 genomes]
rs11054541	0.85[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11054543	0.94[ASN][1000 genomes]
rs11054544	0.94[ASN][1000 genomes]
rs11054545	0.94[ASN][1000 genomes]
rs11054546	0.93[ASN][1000 genomes]
rs11054547	0.89[ASN][1000 genomes]
rs11054548	0.89[ASN][1000 genomes]
rs11054552	0.91[ASN][1000 genomes]
rs11054553	0.91[ASN][1000 genomes]
rs11054554	0.90[ASN][1000 genomes]
rs11054555	0.90[ASN][1000 genomes]
rs11054556	0.91[ASN][1000 genomes]
rs11054590	0.92[ASN][1000 genomes]
rs11054592	0.92[ASN][1000 genomes]
rs11054593	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs11054595	0.92[ASN][1000 genomes]
rs11054598	0.92[ASN][1000 genomes]
rs11054599	0.86[ASN][1000 genomes]
rs11054600	0.88[ASN][1000 genomes]
rs11054601	0.92[ASN][1000 genomes]
rs11054607	0.92[ASN][1000 genomes]
rs11054608	0.92[ASN][1000 genomes]
rs11054611	0.92[ASN][1000 genomes]
rs11054612	0.92[ASN][1000 genomes]
rs11054622	0.84[ASN][1000 genomes]
rs11054625	0.81[ASN][1000 genomes]
rs11561260	0.91[ASN][1000 genomes]
rs12146828	0.92[ASN][1000 genomes]
rs12816383	0.84[ASN][1000 genomes]
rs1419979	0.84[ASN][1000 genomes]
rs1558531	0.92[ASN][1000 genomes]
rs1558532	0.92[ASN][1000 genomes]
rs1558533	0.92[ASN][1000 genomes]
rs2080125	0.84[ASN][1000 genomes]
rs2377089	0.92[ASN][1000 genomes]
rs6488490	0.92[ASN][1000 genomes]
rs6488498	0.91[ASN][1000 genomes]
rs6488499	0.91[ASN][1000 genomes]
rs7134366	0.92[ASN][1000 genomes]
rs7137688	0.90[ASN][1000 genomes]
rs7138813	0.81[EUR][1000 genomes]
rs7301321	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs7302455	0.81[EUR][1000 genomes]
rs7303716	0.92[ASN][1000 genomes]
rs7314249	0.82[ASN][1000 genomes]
rs7314851	0.91[ASN][1000 genomes]
rs73256880	0.92[ASN][1000 genomes]
rs73256883	0.92[ASN][1000 genomes]
rs7955346	0.92[ASN][1000 genomes]
rs7959013	0.90[ASN][1000 genomes]
rs7959765	0.92[ASN][1000 genomes]
rs7970227	0.92[ASN][1000 genomes]
rs7972470	0.92[ASN][1000 genomes]
rs7974405	0.92[ASN][1000 genomes]
rs7976359	0.92[ASN][1000 genomes]
rs7980155	0.92[ASN][1000 genomes]
rs9634074	0.82[ASN][1000 genomes]
rs9634075	0.90[AFR][1000 genomes];0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9634123	0.82[ASN][1000 genomes]
rs9634124	0.91[ASN][1000 genomes]
rs9634125	0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041155	chr12:7655137-7821891	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
2	nsv1045650	chr12:7655137-7824995	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:7724600-7726800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr12:7724800-7727000	Weak transcription	Monocytes-CD14+_RO01746	blood

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