Variant report

Variant	rs11054637
Chromosome Location	chr12:12202602-12202603
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10845454	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10845455	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10845456	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs10845457	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs10845458	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11054624	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11054627	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11054628	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11054629	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11054630	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11054632	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12230598	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2448061	0.85[ASN][1000 genomes]
rs7132345	0.95[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7295953	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7350588	0.83[AMR][1000 genomes]
rs7976189	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12199200-12209200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr12:12200200-12213600	Weak transcription	Right Atrium	heart
3	chr12:12202000-12208400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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