Variant report

Variant	rs11054665
Chromosome Location	chr12:12222175-12222176
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11054663	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11054664	1.00[CEU][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11054666	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12582693	1.00[YRI][hapmap]
rs1544670	0.87[CEU][hapmap]
rs2430604	0.85[CEU][hapmap];0.87[EUR][1000 genomes]
rs2900235	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2909009	0.87[CEU][hapmap]
rs2909010	0.82[EUR][1000 genomes]
rs4622349	1.00[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61923180	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12209600-12224000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:12217000-12223800	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr12:12217600-12223600	Weak transcription	HUES48 Cell Line	embryonic stem cell
4	chr12:12217800-12223800	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:12217800-12223800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr12:12220200-12222400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr12:12221200-12223000	Weak transcription	Stomach Mucosa	stomach
8	chr12:12221200-12223200	Weak transcription	Fetal Intestine Small	intestine
9	chr12:12221200-12224000	Weak transcription	Colonic Mucosa	Colon
10	chr12:12221200-12224000	Weak transcription	Gastric	stomach
11	chr12:12221200-12224000	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr12:12221800-12222200	Enhancers	Fetal Lung	lung
13	chr12:12222000-12223200	Weak transcription	Rectal Mucosa Donor 29	rectum

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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