Variant report

Variant	rs11054765
Chromosome Location	chr12:12438395-12438396
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:12419697..12421689-chr12:12437095..12439954,3	MCF-7	breast:
2	chr12:12428084..12430212-chr12:12436853..12438426,2	K562	blood:

Variant related genes	Relation type
ENSG00000070018	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10466849	1.00[CHB][hapmap]
rs10845499	1.00[CHB][hapmap]
rs11054720	1.00[CHB][hapmap]
rs11054729	1.00[CHB][hapmap]
rs11054732	1.00[CHB][hapmap]
rs11054762	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs11834619	1.00[JPT][hapmap]
rs12313063	0.91[AFR][1000 genomes];0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12321230	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12422312	1.00[CHB][hapmap]
rs12425946	1.00[CHB][hapmap]
rs57125171	0.83[ASN][1000 genomes]
rs58389257	1.00[EUR][1000 genomes]
rs6488505	1.00[JPT][hapmap]
rs7308022	1.00[CHB][hapmap]
rs7310632	1.00[JPT][hapmap]
rs7310868	1.00[JPT][hapmap]
rs7315313	1.00[JPT][hapmap]
rs73275029	0.88[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73275034	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73275042	0.86[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs73293337	0.89[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74061124	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74061127	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74061140	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74061143	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74061150	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74061155	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs74061157	1.00[ASN][1000 genomes]
rs74061158	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7957531	1.00[CHB][hapmap]
rs7972682	1.00[JPT][hapmap]
rs7973718	1.00[CHB][hapmap]
rs7978064	1.00[CHB][hapmap]
rs7980348	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949003	chr12:11938229-12618690	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	36 gene(s)	inside rSNPs	diseases
2	nsv898806	chr12:12264471-12453808	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	15 gene(s)	inside rSNPs	diseases
3	nsv832332	chr12:12344027-12484966	Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12434400-12443000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr12:12436600-12446200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr12:12437000-12442200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr12:12437000-12447600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:12437600-12438800	Weak transcription	Fetal Brain Male	brain
6	chr12:12437600-12441200	Weak transcription	A549	lung
7	chr12:12437600-12443000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
8	chr12:12437600-12443800	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr12:12438000-12438600	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr12:12438200-12438800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links