Variant report

Variant	rs1105877
Chromosome Location	chr3:133561095-133561096
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:133559414..133561183-chr3:133581541..133583192,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs10512913	1.00[ASW][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877506	chr3:133423473-133569777	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv933605	chr3:133425907-133680641	Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
3	nsv829729	chr3:133444871-133620387	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1105877	DBR1	cis	parietal	SCAN

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:133539400-133572200	Weak transcription	Fetal Brain Male	brain
2	chr3:133542000-133563600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr3:133542800-133569000	Weak transcription	Pancreatic Islets	Pancreatic Islet
4	chr3:133544600-133562200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr3:133544600-133573200	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:133544600-133584200	Weak transcription	Esophagus	oesophagus
7	chr3:133545000-133582800	Weak transcription	Gastric	stomach
8	chr3:133548000-133563400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr3:133548000-133564400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr3:133549200-133561200	Strong transcription	Cortex derived primary cultured neurospheres	brain
11	chr3:133549200-133562400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr3:133550000-133562200	Weak transcription	Right Atrium	heart
13	chr3:133554400-133562000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:133557000-133561400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr3:133558200-133562600	Weak transcription	Fetal Intestine Small	intestine
16	chr3:133558200-133564200	Weak transcription	Aorta	Aorta
17	chr3:133558400-133561600	Weak transcription	Fetal Muscle Leg	muscle
18	chr3:133558400-133562800	Weak transcription	Left Ventricle	heart
19	chr3:133558400-133564200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr3:133558400-133572400	Weak transcription	Brain Substantia Nigra	brain
21	chr3:133558600-133564000	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:133558600-133572200	Weak transcription	Adipose Nuclei	Adipose
23	chr3:133558600-133588000	Weak transcription	Spleen	Spleen
24	chr3:133558800-133572000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr3:133559200-133563600	Weak transcription	Fetal Muscle Trunk	muscle
26	chr3:133559200-133564200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:133560000-133572200	Weak transcription	Brain Anterior Caudate	brain
28	chr3:133560200-133561800	Weak transcription	Brain Cingulate Gyrus	brain
29	chr3:133560200-133562400	Weak transcription	Fetal Stomach	stomach
30	chr3:133560200-133562600	Weak transcription	Brain Inferior Temporal Lobe	brain
31	chr3:133560200-133562800	Weak transcription	Brain Angular Gyrus	brain
32	chr3:133560200-133570000	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr3:133560400-133561800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr3:133560400-133563200	Weak transcription	Right Ventricle	heart
35	chr3:133560400-133564000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr3:133560400-133587000	Weak transcription	Stomach Smooth Muscle	stomach
37	chr3:133560600-133571800	Weak transcription	Brain Germinal Matrix	brain
38	chr3:133560800-133562000	Enhancers	Pancreas	Pancrea
39	chr3:133560800-133572200	Weak transcription	Fetal Brain Female	brain

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