Variant report

Variant	rs11059120
Chromosome Location	chr12:123129304-123129305
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs11059214	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs34773022	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054458	chr12:123045662-123133545	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123077400-123137600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:123101600-123131000	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr12:123108000-123131400	Weak transcription	NHLF	lung
4	chr12:123111600-123136200	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr12:123112200-123130600	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr12:123112200-123131200	Weak transcription	Osteobl	bone
7	chr12:123112400-123129400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr12:123112400-123131000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr12:123115000-123131400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr12:123120200-123131000	Weak transcription	GM12878-XiMat	blood
11	chr12:123120200-123140800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr12:123120400-123131000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr12:123120600-123129400	Weak transcription	Dnd41	blood
14	chr12:123120600-123131200	Weak transcription	A549	lung
15	chr12:123122600-123129600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
16	chr12:123127600-123129600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:123127800-123129800	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr12:123127800-123129800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
19	chr12:123128200-123130000	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr12:123128200-123147600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr12:123128400-123129600	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr12:123128400-123131200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr12:123128400-123131200	Weak transcription	NHDF-Ad	bronchial
24	chr12:123128600-123129600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr12:123128600-123131000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr12:123128600-123133400	Weak transcription	HepG2	liver
27	chr12:123128800-123129400	Enhancers	K562	blood
28	chr12:123128800-123131000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr12:123128800-123131200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr12:123128800-123136200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr12:123129000-123130000	Enhancers	ES-I3 Cell Line	embryonic stem cell
32	chr12:123129000-123130600	Weak transcription	Primary hematopoietic stem cells	blood
33	chr12:123129000-123130600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr12:123129000-123131000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
35	chr12:123129200-123129400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr12:123129200-123129800	Enhancers	Placenta	Placenta

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