Variant report

Variant	rs11059764
Chromosome Location	chr12:123240972-123240973
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:123240856..123246035-chr12:123255741..123259598,6	MCF-7	breast:
2	chr12:123238831..123241480-chr12:123248659..123252365,6	K562	blood:
3	chr12:123106486..123108264-chr12:123238733..123241698,2	K562	blood:
4	chr12:123235308..123239495-chr12:123239510..123247125,14	MCF-7	breast:
5	chr12:123236060..123239548-chr12:123239608..123242338,6	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139726	Chromatin interaction
ENSG00000130783	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs10466866	1.00[CEU][hapmap];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12301956	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899571	chr12:123215734-123363562	Strong transcription Enhancers Flanking Active TSS Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:123238200-123242600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr12:123238200-123249400	Weak transcription	Aorta	Aorta
3	chr12:123238400-123241200	Weak transcription	Ovary	ovary
4	chr12:123238400-123243000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr12:123238400-123258000	Strong transcription	Fetal Muscle Trunk	muscle
6	chr12:123238600-123242400	Genic enhancers	Primary T helper memory cells from peripheral blood 2	blood
7	chr12:123238600-123245200	Strong transcription	Skeletal Muscle Male	skeletal muscle
8	chr12:123238600-123248400	Weak transcription	Right Ventricle	heart
9	chr12:123238600-123249000	Weak transcription	Fetal Heart	heart
10	chr12:123238600-123250800	Weak transcription	Stomach Mucosa	stomach
11	chr12:123238600-123255600	Strong transcription	Fetal Intestine Large	intestine
12	chr12:123238600-123255800	Strong transcription	Rectal Mucosa Donor 29	rectum
13	chr12:123238600-123258800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:123238800-123241000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr12:123238800-123241000	Weak transcription	HSMMtube	muscle
16	chr12:123238800-123241400	Weak transcription	Pancreatic Islets	Pancreatic Islet
17	chr12:123238800-123241600	Strong transcription	Fetal Stomach	stomach
18	chr12:123238800-123242000	Strong transcription	Psoas Muscle	Psoas
19	chr12:123238800-123242200	Weak transcription	Gastric	stomach
20	chr12:123238800-123242400	Weak transcription	Small Intestine	intestine
21	chr12:123238800-123242600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr12:123238800-123242600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr12:123238800-123242600	Weak transcription	Colonic Mucosa	Colon
24	chr12:123238800-123242600	Weak transcription	Spleen	Spleen
25	chr12:123238800-123243200	Strong transcription	Skeletal Muscle Female	skeletal muscle
26	chr12:123238800-123243400	Strong transcription	Brain Substantia Nigra	brain
27	chr12:123238800-123244000	Strong transcription	iPS-15b Cell Line	embryonic stem cell
28	chr12:123238800-123244200	Strong transcription	Duodenum Smooth Muscle	Duodenum
29	chr12:123238800-123244600	Weak transcription	Rectal Smooth Muscle	rectum
30	chr12:123238800-123245000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr12:123238800-123245200	Strong transcription	Fetal Lung	lung
32	chr12:123238800-123245400	Strong transcription	ES-I3 Cell Line	embryonic stem cell
33	chr12:123238800-123245400	Weak transcription	Esophagus	oesophagus
34	chr12:123238800-123245600	Strong transcription	Brain Inferior Temporal Lobe	brain
35	chr12:123238800-123245600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain
36	chr12:123238800-123246000	Strong transcription	Primary T cells fromperipheralblood	blood
37	chr12:123238800-123246000	Weak transcription	Pancreas	Pancrea
38	chr12:123238800-123246200	Strong transcription	Brain Cingulate Gyrus	brain
39	chr12:123238800-123246400	Strong transcription	Sigmoid Colon	Sigmoid Colon
40	chr12:123238800-123246600	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr12:123238800-123255600	Strong transcription	Primary B cells from peripheral blood	blood
42	chr12:123238800-123255600	Strong transcription	Fetal Muscle Leg	muscle
43	chr12:123238800-123255800	Strong transcription	Primary B cells from cord blood	blood
44	chr12:123238800-123255800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
45	chr12:123238800-123255800	Strong transcription	Cortex derived primary cultured neurospheres	brain
46	chr12:123238800-123255800	Strong transcription	Liver	Liver
47	chr12:123238800-123256000	Strong transcription	NH-A	brain
48	chr12:123238800-123256200	Strong transcription	iPS-18 Cell Line	embryonic stem cell
49	chr12:123238800-123256200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
50	chr12:123238800-123256200	Strong transcription	Primary neutrophils fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links