Variant report

Variant	rs1106209
Chromosome Location	chr1:114051455-114051456
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12132889	0.96[ASN][1000 genomes]
rs12354140	0.90[ASN][1000 genomes]
rs12354322	0.88[ASN][1000 genomes]
rs12739961	0.90[ASN][1000 genomes]
rs2359412	0.86[ASN][1000 genomes]
rs35724759	0.85[ASN][1000 genomes]
rs6685909	0.94[ASN][1000 genomes]
rs6700878	0.96[ASN][1000 genomes]
rs7523209	0.91[ASN][1000 genomes]
rs7552618	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427719	chr1:113570229-114078388	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:114034200-114053200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:114049400-114052600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr1:114050000-114051800	Enhancers	Stomach Mucosa	stomach
4	chr1:114050200-114051800	Enhancers	Fetal Intestine Large	intestine
5	chr1:114050400-114051800	Enhancers	Fetal Intestine Small	intestine
6	chr1:114050800-114051800	Flanking Active TSS	HepG2	liver
7	chr1:114051200-114051600	Flanking Active TSS	Liver	Liver
8	chr1:114051200-114051600	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr1:114051200-114053400	Weak transcription	Gastric	stomach
10	chr1:114051200-114053400	Weak transcription	Rectal Mucosa Donor 31	rectum
11	chr1:114051200-114054000	Weak transcription	Pancreas	Pancrea
12	chr1:114051400-114052600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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