Variant report

Variant	rs1106255
Chromosome Location	chr3:161390305-161390306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:161390301..161392995-chr3:161393453..161395023,2	MCF-7	breast:

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1399913	0.89[AFR][1000 genomes]
rs1399915	0.89[AFR][1000 genomes]
rs1515725	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1515726	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1588908	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1588909	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2203490	0.84[AFR][1000 genomes]
rs2222055	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2404570	0.80[EUR][1000 genomes]
rs4472057	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4593045	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs4856712	0.89[AFR][1000 genomes]
rs6441395	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6809783	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7432487	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7652034	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9290089	0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9820806	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9829196	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9861671	0.81[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs9867300	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9879283	0.92[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161379000-161391600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:161380000-161393200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:161386800-161390400	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr3:161390200-161391400	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr3:161390200-161393200	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr3:161390200-161393400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr3:161390200-161393600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
8	chr3:161390200-161394000	Enhancers	HUES64 Cell Line	embryonic stem cell

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