Variant report

Variant	rs11063175
Chromosome Location	chr12:4578834-4578835
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10849083	1.00[JPT][hapmap]
rs11063176	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12320287	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs2907497	1.00[AMR][1000 genomes]
rs2909382	1.00[AMR][1000 genomes]
rs2970811	1.00[AMR][1000 genomes]
rs2970813	1.00[AMR][1000 genomes]
rs2970814	1.00[AMR][1000 genomes]
rs2970816	1.00[AMR][1000 genomes]
rs2970817	1.00[AMR][1000 genomes]
rs2970825	1.00[AMR][1000 genomes]
rs6489554	1.00[AMR][1000 genomes]
rs7136895	1.00[AMR][1000 genomes]
rs7972349	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530520	chr12:3726841-4601757	Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
2	nsv557123	chr12:4436632-4736569	Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4578000-4579000	Weak transcription	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links