Variant report

Variant	rs11063337
Chromosome Location	chr12:4889126-4889127
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:4889098..4891222-chr12:4894443..4897225,2	MCF-7	breast:
2	chr12:4873235..4875962-chr12:4887728..4890424,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10459130	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10744660	0.94[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.95[EUR][1000 genomes]
rs10849134	0.89[CEU][hapmap];0.87[CHB][hapmap];0.94[EUR][1000 genomes]
rs11063319	0.94[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes]
rs1860347	1.00[CEU][hapmap];0.90[CHB][hapmap];0.86[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3782743	0.83[JPT][hapmap]
rs4766284	0.94[CEU][hapmap];0.89[CHB][hapmap];0.87[JPT][hapmap];0.94[EUR][1000 genomes]
rs4766285	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6489564	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs7132150	1.00[CEU][hapmap];0.90[CHB][hapmap];0.87[JPT][hapmap];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7979891	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4873200-4889800	Weak transcription	Stomach Smooth Muscle	stomach
2	chr12:4873400-4889400	Weak transcription	Ovary	ovary
3	chr12:4882200-4893600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:4882800-4889800	Weak transcription	Fetal Brain Female	brain
5	chr12:4882800-4891800	Weak transcription	Brain Germinal Matrix	brain
6	chr12:4884400-4918200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr12:4885800-4890400	Weak transcription	Brain Anterior Caudate	brain
8	chr12:4886000-4890800	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr12:4888000-4891200	Enhancers	Breast Myoepithelial Primary Cells	Breast
10	chr12:4888600-4889200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr12:4888600-4889600	Bivalent Enhancer	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr12:4888600-4890200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
13	chr12:4888800-4889200	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
14	chr12:4888800-4889400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr12:4888800-4889600	Enhancers	Brain Substantia Nigra	brain
16	chr12:4888800-4890000	Weak transcription	Right Atrium	heart
17	chr12:4889000-4889200	Enhancers	Brain Inferior Temporal Lobe	brain
18	chr12:4889000-4889800	Bivalent Enhancer	Fetal Muscle Leg	muscle
19	chr12:4889000-4890400	Weak transcription	Brain Hippocampus Middle	brain
20	chr12:4889000-4890800	Enhancers	Cortex derived primary cultured neurospheres	brain
21	chr12:4889000-4890800	Enhancers	Aorta	Aorta

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