Variant report

Variant	rs11064640
Chromosome Location	chr12:1123085-1123086
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:1121748..1124121-chr12:1125522..1128122,2	K562	blood:
2	chr12:1102489..1104981-chr12:1121749..1123712,2	MCF-7	breast:

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10744530	0.80[ASN][1000 genomes]
rs10774480	0.80[ASN][1000 genomes]
rs10774482	0.87[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs10848431	0.84[ASN][1000 genomes]
rs10848433	0.82[ASN][1000 genomes]
rs10849612	0.92[ASN][1000 genomes]
rs10849620	0.93[ASN][1000 genomes]
rs11061620	0.84[ASN][1000 genomes]
rs11064634	0.92[ASN][1000 genomes]
rs12370704	0.92[ASN][1000 genomes]
rs12582029	0.92[ASN][1000 genomes]
rs12811563	0.88[ASN][1000 genomes]
rs1362135	0.80[ASN][1000 genomes]
rs2079299	0.95[ASN][1000 genomes]
rs2097859	0.95[ASN][1000 genomes]
rs2107650	0.82[ASN][1000 genomes]
rs2107651	0.82[ASN][1000 genomes]
rs4765965	0.90[ASN][1000 genomes]
rs4765969	0.93[ASN][1000 genomes]
rs61088399	0.97[ASN][1000 genomes]
rs61917255	0.97[ASN][1000 genomes]
rs61918692	0.97[ASN][1000 genomes]
rs61918705	0.98[ASN][1000 genomes]
rs6489255	0.90[ASN][1000 genomes]
rs7311276	0.93[ASN][1000 genomes]
rs7954121	0.83[ASN][1000 genomes]
rs7956944	0.93[ASN][1000 genomes]
rs7974198	0.93[ASN][1000 genomes]
rs7974686	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7979637	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:29 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049944	chr12:282465-1232077	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv541306	chr12:282465-1232077	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv556892	chr12:673515-1210884	Weak transcription Enhancers Genic enhancers Active TSS Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
4	nsv898576	chr12:813411-1553450	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
5	nsv948760	chr12:863833-1542875	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
6	nsv1052589	chr12:910460-1421493	ZNF genes & repeats Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
7	nsv1045278	chr12:920251-1697030	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
8	nsv529398	chr12:941915-1741311	Weak transcription Strong transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
9	nsv468960	chr12:975276-1455106	Enhancers Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
10	nsv556941	chr12:975276-1455106	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
11	nsv1044329	chr12:985144-1403020	Genic enhancers Weak transcription Enhancers Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
12	nsv541340	chr12:985144-1403020	Flanking Active TSS Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
13	nsv470256	chr12:998365-1438761	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
14	nsv492321	chr12:1011692-1388512	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
15	nsv898579	chr12:1013176-1510505	Strong transcription Weak transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
16	nsv898580	chr12:1024688-1569097	Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
17	nsv1036488	chr12:1041097-1445923	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
18	nsv1037825	chr12:1045734-1432940	Bivalent/Poised TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
19	nsv541342	chr12:1045734-1432940	Active TSS Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
20	nsv868854	chr12:1045935-1354083	Weak transcription Active TSS Enhancers Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
21	esv2762958	chr12:1049279-1554962	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
22	nsv1052559	chr12:1077964-1588543	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
23	nsv898581	chr12:1084783-1527359	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
24	nsv1041799	chr12:1091294-1304839	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
25	nsv541343	chr12:1091294-1304839	Flanking Active TSS Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
26	nsv468963	chr12:1106783-1220688	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
27	nsv556943	chr12:1106783-1220688	Enhancers Weak transcription Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
28	nsv524382	chr12:1108730-1125475	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
29	nsv515491	chr12:1119958-1125475	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:82 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:1101200-1137000	Weak transcription	Lung	lung
2	chr12:1101600-1130400	Weak transcription	Fetal Muscle Trunk	muscle
3	chr12:1101600-1136800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
4	chr12:1101600-1136800	Weak transcription	Fetal Muscle Leg	muscle
5	chr12:1101600-1137000	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr12:1101800-1131000	Weak transcription	Primary B cells from cord blood	blood
7	chr12:1102000-1137000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr12:1102000-1137200	Weak transcription	Fetal Lung	lung
9	chr12:1102200-1129000	Weak transcription	Primary T cells from cord blood	blood
10	chr12:1102200-1131000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr12:1102200-1131400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr12:1102200-1135200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
13	chr12:1102600-1136800	Weak transcription	Primary T helper cells PMA-I stimulated	--
14	chr12:1102600-1137000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
15	chr12:1107000-1128600	Weak transcription	Spleen	Spleen
16	chr12:1107600-1136600	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr12:1107800-1128200	Weak transcription	Skeletal Muscle Female	skeletal muscle
18	chr12:1108000-1128200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr12:1108000-1131000	Weak transcription	Primary T helper cells fromperipheralblood	blood
20	chr12:1108200-1129000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr12:1110600-1128400	Weak transcription	Fetal Stomach	stomach
22	chr12:1110800-1130400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr12:1111000-1133200	Weak transcription	Placenta	Placenta
24	chr12:1111800-1129600	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr12:1112400-1130400	Weak transcription	Primary monocytes fromperipheralblood	blood
26	chr12:1113200-1130000	Weak transcription	Fetal Intestine Small	intestine
27	chr12:1113200-1131600	Weak transcription	Thymus	Thymus
28	chr12:1113200-1136600	Weak transcription	Fetal Intestine Large	intestine
29	chr12:1113200-1137200	Weak transcription	Brain Anterior Caudate	brain
30	chr12:1113400-1131200	Weak transcription	Liver	Liver
31	chr12:1113400-1137000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr12:1113400-1137000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr12:1113400-1157000	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr12:1113600-1129800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
35	chr12:1114800-1125400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr12:1115800-1124800	Weak transcription	Fetal Heart	heart
37	chr12:1115800-1130400	Weak transcription	Aorta	Aorta
38	chr12:1115800-1137000	Weak transcription	Esophagus	oesophagus
39	chr12:1116400-1137000	Weak transcription	Ovary	ovary
40	chr12:1120400-1137000	Weak transcription	Duodenum Smooth Muscle	Duodenum
41	chr12:1121600-1123600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr12:1122000-1136600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
43	chr12:1122200-1123200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
44	chr12:1122200-1123600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr12:1122400-1123600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr12:1122600-1123200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr12:1122600-1123200	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr12:1122600-1123200	Enhancers	Pancreatic Islets	Pancreatic Islet
49	chr12:1122600-1123200	Enhancers	Gastric	stomach
50	chr12:1122600-1123200	Enhancers	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links