Variant report

Variant	rs11065085
Chromosome Location	chr12:120767741-120767742
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs1007469	0.84[CEU][hapmap]
rs10735072	0.88[EUR][1000 genomes]
rs10774544	0.88[EUR][1000 genomes]
rs10849744	0.87[EUR][1000 genomes]
rs11065080	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11065084	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11065086	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11065097	0.85[EUR][1000 genomes]
rs1179434	0.89[CEU][hapmap]
rs1179435	0.93[EUR][1000 genomes]
rs1183783	0.89[CEU][hapmap]
rs1465207	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2238160	0.96[CEU][hapmap];0.91[EUR][1000 genomes]
rs2239198	0.93[EUR][1000 genomes]
rs2522137	0.96[CEU][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs34570155	0.88[EUR][1000 genomes]
rs67278663	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs68012838	0.88[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7959801	0.96[CEU][hapmap];0.87[EUR][1000 genomes]
rs9669536	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899555	chr12:120519124-120840522	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	499 gene(s)	inside rSNPs	diseases
2	nsv1035698	chr12:120645330-120777580	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases
3	nsv1047447	chr12:120645330-120808621	Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases
4	nsv560435	chr12:120695141-120769657	Flanking Active TSS Bivalent Enhancer Active TSS Enhancers Weak transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	433 gene(s)	inside rSNPs	diseases
5	nsv899556	chr12:120695141-120779931	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	433 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120764000-120773800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:120764000-120783800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
3	chr12:120764000-120799200	Weak transcription	Right Atrium	heart
4	chr12:120765800-120768200	Weak transcription	Gastric	stomach
5	chr12:120765800-120769200	Weak transcription	Fetal Intestine Large	intestine
6	chr12:120765800-120769400	Weak transcription	Fetal Intestine Small	intestine
7	chr12:120766200-120768200	Weak transcription	Pancreas	Pancrea
8	chr12:120766200-120779200	Weak transcription	Liver	Liver
9	chr12:120766400-120769200	Weak transcription	HepG2	liver

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