Variant report

Variant	rs11065089
Chromosome Location	chr12:120779313-120779314
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:120729551..120732306-chr12:120778974..120781933,2	MCF-7	breast:
2	chr12:120779310..120781400-chr12:120781688..120783455,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000202538	Chromatin interaction
ENSG00000200795	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11065079	0.85[AMR][1000 genomes]
rs61945846	0.85[AMR][1000 genomes]
rs61945847	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899555	chr12:120519124-120840522	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	499 gene(s)	inside rSNPs	diseases
2	nsv1047447	chr12:120645330-120808621	Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	436 gene(s)	inside rSNPs	diseases
3	nsv899556	chr12:120695141-120779931	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	433 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:120764000-120783800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr12:120764000-120799200	Weak transcription	Right Atrium	heart
3	chr12:120769400-120785000	Weak transcription	Gastric	stomach
4	chr12:120773600-120780000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr12:120775800-120779400	Weak transcription	Brain Germinal Matrix	brain
6	chr12:120776000-120793200	Weak transcription	Fetal Brain Male	brain
7	chr12:120776400-120779800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
8	chr12:120776400-120781800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr12:120776600-120779800	Weak transcription	Fetal Intestine Small	intestine
10	chr12:120776600-120784200	Weak transcription	H9 Cell Line	embryonic stem cell
11	chr12:120777000-120779800	Weak transcription	Fetal Brain Female	brain
12	chr12:120777800-120780000	Weak transcription	Fetal Stomach	stomach
13	chr12:120778000-120781000	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr12:120778600-120781200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr12:120778600-120781200	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr12:120778600-120794600	Weak transcription	Brain Anterior Caudate	brain
17	chr12:120779200-120779600	Enhancers	HepG2	liver
18	chr12:120779200-120780400	Enhancers	Liver	Liver
19	chr12:120779200-120781000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
20	chr12:120779200-120794600	Strong transcription	Cortex derived primary cultured neurospheres	brain

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