Variant report

Variant	rs11068066
Chromosome Location	chr12:116991777-116991778
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:116990998..116993125-chr14:35021867..35023994,2	MCF-7	breast:
2	chr12:116990108..116992302-chr12:116995187..116997427,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000171471	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12298771	0.91[AFR][1000 genomes]
rs12302744	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12303400	0.91[AFR][1000 genomes]
rs12306087	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899540	chr12:116920503-116999861	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:116984200-116996800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:116984200-116997000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:116986600-116993000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr12:116986600-116993400	Weak transcription	Fetal Brain Male	brain
5	chr12:116986600-116994800	Weak transcription	Thymus	Thymus
6	chr12:116987600-116994400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr12:116988800-116992800	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr12:116990200-116994800	Weak transcription	NH-A	brain
9	chr12:116990400-116994600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr12:116990400-116994800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr12:116990400-116995200	Weak transcription	NHEK	skin
12	chr12:116990600-116995200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr12:116990600-116995200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr12:116990800-116995200	Weak transcription	Spleen	Spleen
15	chr12:116990800-116996400	Weak transcription	Placenta	Placenta
16	chr12:116990800-116996800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
17	chr12:116991000-116994400	Weak transcription	Primary neutrophils fromperipheralblood	blood
18	chr12:116991600-116992200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr12:116991600-116992200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr12:116991600-116992400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr12:116991600-116994400	Weak transcription	Primary B cells from peripheral blood	blood
22	chr12:116991600-116994400	Weak transcription	K562	blood
23	chr12:116991600-116994400	Weak transcription	Monocytes-CD14+_RO01746	blood

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