Variant report

Variant	rs11068138
Chromosome Location	chr12:117107591-117107592
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11068137	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11068145	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35712592	0.89[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4285976	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832523	chr12:117090343-117273810	Strong transcription Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117104200-117110000	Weak transcription	Primary hematopoietic stem cells	blood
2	chr12:117104400-117109000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr12:117104800-117113800	Weak transcription	Lung	lung
4	chr12:117106600-117107800	Enhancers	Primary hematopoietic stem cells short term culture	blood
5	chr12:117106600-117107800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
6	chr12:117107200-117107800	Enhancers	Fetal Thymus	thymus

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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