Variant report
| Variant | rs11068227 |
|---|---|
| Chromosome Location | chr12:117340250-117340251 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:3)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:3 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000240100 | Chromatin interaction |
| ENSG00000174989 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:25)
| rs_ID | r2[population] |
|---|---|
| rs11068229 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes] |
| rs11068257 | 1.00[AMR][1000 genomes] |
| rs11068261 | 1.00[AMR][1000 genomes] |
| rs11068291 | 1.00[AMR][1000 genomes] |
| rs12296579 | 1.00[AMR][1000 genomes] |
| rs12297294 | 1.00[AMR][1000 genomes] |
| rs12299197 | 1.00[AMR][1000 genomes] |
| rs12299208 | 1.00[AMR][1000 genomes] |
| rs12303371 | 1.00[AMR][1000 genomes] |
| rs12304848 | 1.00[AMR][1000 genomes] |
| rs12306116 | 1.00[AMR][1000 genomes] |
| rs12307625 | 1.00[AMR][1000 genomes] |
| rs12308160 | 1.00[AMR][1000 genomes] |
| rs12308162 | 1.00[AMR][1000 genomes] |
| rs12309933 | 1.00[AMR][1000 genomes] |
| rs12309993 | 1.00[AMR][1000 genomes] |
| rs12310473 | 1.00[AMR][1000 genomes] |
| rs12311443 | 1.00[AMR][1000 genomes] |
| rs12313091 | 1.00[AMR][1000 genomes] |
| rs12316781 | 1.00[AMR][1000 genomes] |
| rs12319981 | 1.00[AMR][1000 genomes] |
| rs12322115 | 1.00[AMR][1000 genomes] |
| rs61193113 | 1.00[AMR][1000 genomes] |
| rs7300401 | 1.00[AMR][1000 genomes] |
| rs7309550 | 1.00[AMR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv832524 | chr12:117314110-117496576 | Weak transcription Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 13 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
