Variant report

Variant	rs11068336
Chromosome Location	chr12:117539486-117539487
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117537725..117540420-chr12:117546898..117548910,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs10850787	1.00[ASW][hapmap]
rs11068328	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11613558	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832526	chr12:117530234-117723821	Strong transcription Enhancers Active TSS Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117537600-117540000	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:117537600-117540000	Weak transcription	Left Ventricle	heart
3	chr12:117537600-117540600	Bivalent Enhancer	Fetal Muscle Trunk	muscle
4	chr12:117537600-117556400	Weak transcription	Right Atrium	heart
5	chr12:117537800-117539800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:117537800-117539800	Enhancers	Monocytes-CD14+_RO01746	blood
7	chr12:117537800-117540200	Enhancers	A549	lung
8	chr12:117537800-117540400	Enhancers	Primary hematopoietic stem cells short term culture	blood
9	chr12:117537800-117543200	Weak transcription	Dnd41	blood
10	chr12:117538200-117540400	Enhancers	Fetal Thymus	thymus
11	chr12:117538800-117539800	Bivalent Enhancer	Adipose Nuclei	Adipose
12	chr12:117538800-117540800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
13	chr12:117538800-117540800	Bivalent Enhancer	Fetal Muscle Leg	muscle
14	chr12:117538800-117549200	Weak transcription	Pancreas	Pancrea
15	chr12:117539000-117539800	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
16	chr12:117539200-117539600	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
17	chr12:117539200-117540000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr12:117539200-117540200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
19	chr12:117539400-117539600	Enhancers	Primary neutrophils fromperipheralblood	blood
20	chr12:117539400-117539600	Flanking Active TSS	HepG2	liver
21	chr12:117539400-117540400	Bivalent Enhancer	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr12:117539400-117540800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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