Variant report

Variant	rs11068507
Chromosome Location	chr12:117924582-117924583
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:117922408..117925128-chr12:117937120..117940013,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10160848	1.00[AMR][1000 genomes]
rs11068509	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12298648	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12316746	1.00[AMR][1000 genomes]
rs13313227	1.00[AMR][1000 genomes]
rs73405429	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560386	chr12:117822187-117991547	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv899543	chr12:117882412-117925208	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:117909200-117925200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr12:117909200-117925200	Weak transcription	Pancreas	Pancrea
3	chr12:117916200-117925200	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr12:117920800-117932800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:117922600-117924800	Flanking Active TSS	A549	lung
6	chr12:117923800-117925600	Enhancers	NHDF-Ad	bronchial
7	chr12:117924000-117925600	Enhancers	Hela-S3	cervix
8	chr12:117924000-117925800	Enhancers	HSMMtube	muscle
9	chr12:117924200-117924600	Enhancers	Pancreatic Islets	Pancreatic Islet
10	chr12:117924200-117925400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
11	chr12:117924200-117925800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr12:117924400-117925200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr12:117924400-117925200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr12:117924400-117925400	Weak transcription	Right Atrium	heart
15	chr12:117924400-117925600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
16	chr12:117924400-117925600	Enhancers	Muscle Satellite Cultured Cells	--
17	chr12:117924400-117925600	Enhancers	Psoas Muscle	Psoas
18	chr12:117924400-117925600	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr12:117924400-117925600	Enhancers	Skeletal Muscle Female	skeletal muscle
20	chr12:117924400-117925800	Enhancers	HUVEC	blood vessel

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