Variant report

Variant	rs1106925
Chromosome Location	chr5:107795511-107795512
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs60371985	1.00[AMR][1000 genomes]
rs60618863	1.00[AMR][1000 genomes]
rs6886830	1.00[AMR][1000 genomes]
rs73214564	1.00[AMR][1000 genomes]
rs73214582	1.00[AMR][1000 genomes]
rs73216312	1.00[AMR][1000 genomes]
rs73216346	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882689	chr5:107595383-108299744	Enhancers ZNF genes & repeats Active TSS Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	61 gene(s)	inside rSNPs	diseases
2	esv14828	chr5:107794869-107795891	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:107795200-107795800	Enhancers	Fetal Lung	lung
2	chr5:107795200-107796000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr5:107795200-107796000	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr5:107795400-107795600	Enhancers	HSMMtube	muscle
5	chr5:107795400-107795800	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr5:107795400-107795800	Active TSS	Brain Angular Gyrus	brain
7	chr5:107795400-107796200	Enhancers	Brain Germinal Matrix	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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