Variant report

Variant	rs11070338
Chromosome Location	chr15:41852628-41852629
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:4)
CpG islands
(count:61)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:4 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	BCL3	chr15:41852468-41852823	GM12878	blood:	n/a	n/a
2	POLR2A	chr15:41851238-41852973	K562	blood:	n/a	n/a
3	ZNF263	chr15:41851058-41853318	HEK293-T-REx	kidney:	n/a	chr15:41851388-41851409 chr15:41851348-41851369 chr15:41851896-41851905 chr15:41851160-41851169
4	POLR2A	chr15:41852393-41852655	HepG2	liver:	n/a	n/a

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr15:41852586-41852636	HepG2	liver:	n/a
2	chr15:41852586-41852636	HUVEC	blood vessel:	n/a
3	chr15:41852586-41852636	ovcar-3	ovarian:	n/a
4	chr15:41852586-41852636	NHDF-neo	bronchial:	n/a
5	chr15:41852586-41852636	Hepatocyte	liver:	n/a
6	chr15:41852586-41852636	ECC-1	luminal epithelium:	n/a
7	chr15:41852586-41852636	GM06990	blood:	n/a
8	chr15:41852586-41852636	IMR90	lung:	fetal
9	chr15:41852586-41852636	CMK	blood:	n/a
10	chr15:41852586-41852636	BJ	skin:	n/a
11	chr15:41852586-41852636	Hela-S3	cervix:	n/a
12	chr15:41852586-41852636	GM19239	blood:	n/a
13	chr15:41852586-41852636	HNPCEpiC	eye:	n/a
14	chr15:41852586-41852636	AG09319	gingival:	n/a
15	chr15:41852586-41852636	A549	lung:	n/a
16	chr15:41852586-41852636	HCM	heart:	n/a
17	chr15:41852586-41852636	T-47D	breast:	n/a
18	chr15:41852586-41852636	HCT-116	colon:	n/a
19	chr15:41852586-41852636	HRCEpiC	kidney:	n/a
20	chr15:41852586-41852636	H1-hESC	embryonic stem cell:	embryo
21	chr15:41852586-41852636	NH-A	brain:	n/a
22	chr15:41852586-41852636	HEEpiC	esophagus:	n/a
23	chr15:41852586-41852636	AG10803	skin:	n/a
24	chr15:41852586-41852636	HMEC	breast:	n/a
25	chr15:41852586-41852636	NT2-D1	testis:	n/a
26	chr15:41852586-41852636	MCF-7	breast:	n/a
27	chr15:41852586-41852636	PFSK-1	brain:	n/a
28	chr15:41852586-41852636	HEK293	kidney:	embryo
29	chr15:41852586-41852636	GM12891	blood:	n/a
30	chr15:41852586-41852636	HCPEpiC	choroid plexus:	n/a
31	chr15:41852586-41852636	Caco-2	colon:	n/a
32	chr15:41852586-41852636	RPTEC	kidney:	n/a
33	chr15:41852586-41852636	HPAEpiC	pulmonary alveolar:	n/a
34	chr15:41852586-41852636	AG09309	skin:	n/a
35	chr15:41852586-41852636	AoSMC	blood vessel:	n/a
36	chr15:41852586-41852636	SKMC	muscle:	n/a
37	chr15:41852586-41852636	HRPEpiC	eye:	n/a
38	chr15:41852586-41852636	ProgFib	skin:	n/a
39	chr15:41852586-41852636	GM12892	blood:	n/a
40	chr15:41852586-41852636	LNCaP	prostate:	n/a
41	chr15:41852586-41852636	SK-N-MC	brain:	n/a
42	chr15:41852586-41852636	SK-N-SH	brain:	n/a
43	chr15:41852586-41852636	PrEC	prostate:	n/a
44	chr15:41852586-41852636	GM12878	blood:	n/a
45	chr15:41852586-41852636	HIPEpiC	eye:	n/a
46	chr15:41852586-41852636	U87	brain:	n/a
47	chr15:41852586-41852636	NB4	blood:	n/a
48	chr15:41852586-41852636	K562	blood:	n/a
49	chr15:41852586-41852636	MCF10A-Er-Src	breast:	n/a
50	chr15:41852586-41852636	SK-N-SH_RA	brain:	n/a

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr15:41851361..41854178-chr15:42065182..42067599,2	K562	blood:
2	chr15:41851029..41853126-chr15:41899971..41902269,2	K562	blood:
3	chr15:41849860..41852803-chr15:41858013..41860929,2	MCF-7	breast:
4	chr15:41847317..41853712-chr15:41951201..41955578,8	K562	blood:
5	chr15:41835713..41840265-chr15:41851401..41853463,4	K562	blood:
6	chr15:41849459..41853162-chr15:41854225..41857161,4	MCF-7	breast:
7	chr15:41784400..41789772-chr15:41847283..41854059,7	K562	blood:
8	chr15:41849370..41852913-chr15:41951069..41953769,6	K562	blood:
9	chr15:41850576..41853126-chr15:41900769..41903357,2	K562	blood:

No data

Variant related genes	Relation type
TYRO3	TF binding region
TYRO3	CpG island
ENSG00000103932	Chromatin interaction
ENSG00000137825	Chromatin interaction
ENSG00000137802	Chromatin interaction
ENSG00000260926	Chromatin interaction
ENSG00000092445	Chromatin interaction
ENSG00000174197	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3311131	chr15:41851466-41853360	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	esv3311132	chr15:41851466-41853360	Flanking Active TSS Enhancers Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:41850000-41853000	Enhancers	Fetal Heart	heart
2	chr15:41850200-41853200	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr15:41850800-41853000	Active TSS	Fetal Kidney	kidney
4	chr15:41851800-41852800	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr15:41851800-41852800	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr15:41851800-41852800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr15:41851800-41852800	Flanking Active TSS	Fetal Stomach	stomach
8	chr15:41851800-41853000	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
9	chr15:41851800-41853000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:41851800-41853000	Flanking Active TSS	Adipose Nuclei	Adipose
11	chr15:41851800-41853000	Flanking Active TSS	Esophagus	oesophagus
12	chr15:41851800-41853000	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
13	chr15:41851800-41853200	Flanking Active TSS	Dnd41	blood
14	chr15:41852000-41852800	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
15	chr15:41852000-41852800	Flanking Active TSS	Fetal Intestine Large	intestine
16	chr15:41852000-41852800	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
17	chr15:41852000-41852800	Flanking Active TSS	Hela-S3	cervix
18	chr15:41852000-41853000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
19	chr15:41852000-41853200	Transcr. at gene 5' and 3'	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
20	chr15:41852000-41853400	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr15:41852000-41853400	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
22	chr15:41852000-41853400	Flanking Active TSS	Brain Hippocampus Middle	brain
23	chr15:41852000-41853800	Flanking Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr15:41852200-41852800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
25	chr15:41852200-41852800	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
26	chr15:41852200-41852800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
27	chr15:41852200-41852800	Flanking Active TSS	Ovary	ovary
28	chr15:41852200-41853000	Flanking Active TSS	Fetal Intestine Small	intestine
29	chr15:41852200-41853000	Enhancers	Left Ventricle	heart
30	chr15:41852200-41853000	Bivalent Enhancer	Skeletal Muscle Female	skeletal muscle
31	chr15:41852200-41853200	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell
32	chr15:41852200-41853200	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr15:41852200-41853200	Flanking Active TSS	Fetal Brain Female	brain
34	chr15:41852200-41854000	Flanking Active TSS	Brain Anterior Caudate	brain
35	chr15:41852200-41854400	Transcr. at gene 5' and 3'	Foreskin Fibroblast Primary Cells skin02	Skin
36	chr15:41852200-41854400	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
37	chr15:41852200-41877400	Weak transcription	Aorta	Aorta
38	chr15:41852400-41852800	Active TSS	HUES48 Cell Line	embryonic stem cell
39	chr15:41852400-41852800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
40	chr15:41852400-41852800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
41	chr15:41852400-41852800	Active TSS	Brain Germinal Matrix	brain
42	chr15:41852400-41852800	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
43	chr15:41852400-41853000	Bivalent Enhancer	Colonic Mucosa	Colon
44	chr15:41852400-41853000	Enhancers	Lung	lung
45	chr15:41852400-41853000	Enhancers	Spleen	Spleen
46	chr15:41852400-41853200	Flanking Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr15:41852400-41853200	Enhancers	Gastric	stomach
48	chr15:41852400-41853400	Enhancers	Right Ventricle	heart
49	chr15:41852400-41853400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
50	chr15:41852400-41853600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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