Variant report
| Variant | rs11070698 |
|---|---|
| Chromosome Location | chr15:49794848-49794849 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs11070711 | 1.00[CEU][hapmap];0.96[YRI][hapmap];0.88[AFR][1000 genomes];0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12591799 | 1.00[CEU][hapmap] |
| rs12592177 | 1.00[CEU][hapmap] |
| rs12592296 | 1.00[CEU][hapmap] |
| rs12594154 | 1.00[CEU][hapmap] |
| rs12594827 | 1.00[CEU][hapmap] |
| rs1354919 | 1.00[CEU][hapmap];0.82[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs1546424 | 0.83[YRI][hapmap] |
| rs1546425 | 0.80[YRI][hapmap] |
| rs1580996 | 1.00[CEU][hapmap];0.86[YRI][hapmap] |
| rs1580997 | 1.00[CEU][hapmap];0.86[YRI][hapmap] |
| rs1848290 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs1874614 | 1.00[CEU][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.88[EUR][1000 genomes] |
| rs2089471 | 0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs2413958 | 0.86[YRI][hapmap] |
| rs2899437 | 0.87[ASW][hapmap] |
| rs3809495 | 1.00[CEU][hapmap] |
| rs4375606 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs4396481 | 1.00[CEU][hapmap];0.86[YRI][hapmap];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs4774539 | 0.83[YRI][hapmap] |
| rs7178101 | 0.86[YRI][hapmap] |
| rs8031680 | 0.87[ASW][hapmap] |
| rs8040436 | 0.83[YRI][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv9263 | chr15:49734435-49809465 | Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 2 gene(s) | inside rSNPs | diseases |
| 2 | nsv1043119 | chr15:49760222-49844366 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 3 gene(s) | inside rSNPs | diseases |
| 3 | nsv1039185 | chr15:49786255-49844366 | Strong transcription Weak transcription Enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 3 gene(s) | inside rSNPs | diseases |
| 4 | nsv569392 | chr15:49789413-49926300 | ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 23 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr15:49794800-49795200 | ZNF genes & repeats | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
