Variant report

Variant	rs11071283
Chromosome Location	chr15:56949333-56949334
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:56947710..56949371-chr15:56958566..56961070,2	K562	blood:
2	chr15:56946938..56949698-chr15:56952748..56954656,3	MCF-7	breast:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10518858	0.87[EUR][1000 genomes]
rs11071282	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11634704	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11635201	0.89[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12148781	0.87[EUR][1000 genomes]
rs12441674	0.93[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1600830	0.85[EUR][1000 genomes]
rs1680488	1.00[JPT][hapmap];0.93[MEX][hapmap];0.82[ASN][1000 genomes]
rs2128172	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28374324	0.89[EUR][1000 genomes]
rs28379958	0.87[EUR][1000 genomes]
rs28409651	0.90[EUR][1000 genomes]
rs28441487	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28620046	0.88[ASN][1000 genomes]
rs28678122	1.00[CEU][hapmap];0.85[CHB][hapmap];0.95[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28778716	0.83[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28782544	0.88[EUR][1000 genomes]
rs28805712	0.89[EUR][1000 genomes]
rs28813195	0.89[EUR][1000 genomes]
rs28830569	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs28842489	0.87[EUR][1000 genomes]
rs28893316	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4774870	0.88[EUR][1000 genomes]
rs4774876	0.88[EUR][1000 genomes]
rs4774881	0.95[EUR][1000 genomes]
rs4774891	0.85[CHB][hapmap];0.95[CHD][hapmap];0.83[GIH][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs534005	0.91[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.88[ASN][1000 genomes]
rs56327619	0.87[EUR][1000 genomes]
rs7182346	0.85[CHB][hapmap];0.95[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap]
rs72744954	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs72744977	0.82[ASN][1000 genomes]
rs8026706	0.89[EUR][1000 genomes]
rs8031549	0.89[EUR][1000 genomes]
rs8031966	1.00[CHB][hapmap];0.91[CHD][hapmap];1.00[JPT][hapmap];0.88[ASN][1000 genomes]
rs8032893	0.89[EUR][1000 genomes]
rs809459	1.00[CHB][hapmap];0.91[CHD][hapmap];0.86[GIH][hapmap];1.00[JPT][hapmap];0.93[MEX][hapmap];0.85[ASN][1000 genomes]
rs9806469	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3422474	chr15:56867190-57244330	Strong transcription ZNF genes & repeats Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
2	nsv1041239	chr15:56888945-56959028	Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent Enhancer Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:100 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:56912800-56957000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
2	chr15:56913400-56955200	Weak transcription	Aorta	Aorta
3	chr15:56916600-56990800	Weak transcription	Pancreas	Pancrea
4	chr15:56916800-56949800	Weak transcription	Fetal Kidney	kidney
5	chr15:56917200-56955200	Weak transcription	Psoas Muscle	Psoas
6	chr15:56917600-56957000	Weak transcription	Brain Anterior Caudate	brain
7	chr15:56917800-56955800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr15:56917800-56956800	Weak transcription	Colon Smooth Muscle	Colon
9	chr15:56917800-56959800	Weak transcription	Brain Angular Gyrus	brain
10	chr15:56917800-56990600	Weak transcription	Rectal Smooth Muscle	rectum
11	chr15:56917800-56990600	Weak transcription	NHLF	lung
12	chr15:56918400-56957200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
13	chr15:56919600-56955200	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr15:56919800-57016600	Weak transcription	Small Intestine	intestine
15	chr15:56920000-56953000	Weak transcription	Fetal Muscle Trunk	muscle
16	chr15:56921600-56955200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
17	chr15:56921600-56955400	Weak transcription	NH-A	brain
18	chr15:56922000-56954800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr15:56922000-56958000	Weak transcription	Lung	lung
20	chr15:56924000-56990600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
21	chr15:56924000-56990800	Weak transcription	NHEK	skin
22	chr15:56924200-56955400	Weak transcription	Fetal Brain Female	brain
23	chr15:56924600-56957200	Weak transcription	HUVEC	blood vessel
24	chr15:56928400-56996800	Weak transcription	Gastric	stomach
25	chr15:56930000-56950000	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr15:56930000-56954800	Weak transcription	Fetal Stomach	stomach
27	chr15:56937400-57000200	Weak transcription	Colonic Mucosa	Colon
28	chr15:56938600-56968200	Weak transcription	HMEC	breast
29	chr15:56939200-56950000	Weak transcription	Brain Inferior Temporal Lobe	brain
30	chr15:56939200-56953800	Weak transcription	Skeletal Muscle Female	skeletal muscle
31	chr15:56939200-56990800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr15:56939400-56955600	Weak transcription	Fetal Heart	heart
33	chr15:56939400-56986000	Weak transcription	Brain Substantia Nigra	brain
34	chr15:56941400-56960200	Weak transcription	Spleen	Spleen
35	chr15:56942400-56951800	Weak transcription	Thymus	Thymus
36	chr15:56943600-56955600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
37	chr15:56943600-56958000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr15:56944000-56949800	Weak transcription	Placenta Amnion	Placenta Amnion
39	chr15:56944200-56951200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr15:56944200-56959600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
41	chr15:56944400-56954800	Weak transcription	Esophagus	oesophagus
42	chr15:56944400-56957600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr15:56944600-56964600	Weak transcription	K562	blood
44	chr15:56944800-56960800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr15:56944800-56962800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
46	chr15:56945200-56963200	Strong transcription	Monocytes-CD14+_RO01746	blood
47	chr15:56945400-56950600	Strong transcription	HSMM	muscle
48	chr15:56945800-56949600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr15:56945800-56950000	Weak transcription	Brain Germinal Matrix	brain
50	chr15:56945800-56951200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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