Variant report

Variant	rs11072384
Chromosome Location	chr15:73001314-73001315
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:72995251..72997702-chr15:73001114..73003793,3	MCF-7	breast:
2	chr15:72981181..72983990-chr15:73000145..73002107,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:26)

rs_ID	r²[population]
rs12439375	0.87[CHB][hapmap];0.91[JPT][hapmap]
rs12441084	0.96[ASN][1000 genomes]
rs12592955	0.86[ASN][1000 genomes]
rs12594844	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs12594938	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs16957293	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs2012253	1.00[CEU][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2278543	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs28502551	0.95[ASN][1000 genomes]
rs34337823	0.85[ASN][1000 genomes]
rs35958407	0.89[ASN][1000 genomes]
rs3759870	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs3850988	0.87[CEU][hapmap];0.87[CHB][hapmap];1.00[JPT][hapmap];0.93[YRI][hapmap];0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4776611	0.91[CHB][hapmap];1.00[JPT][hapmap];0.99[ASN][1000 genomes]
rs4777528	0.87[CHB][hapmap];1.00[JPT][hapmap];0.90[ASN][1000 genomes]
rs4777529	0.92[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs4777530	0.92[CHB][hapmap];0.95[JPT][hapmap]
rs4777533	0.91[CHB][hapmap];0.95[JPT][hapmap]
rs4777540	0.95[CHB][hapmap];0.95[JPT][hapmap]
rs4777543	0.91[CHB][hapmap];0.91[JPT][hapmap]
rs59152128	0.92[ASN][1000 genomes]
rs7178409	0.91[CHB][hapmap]
rs730180	1.00[CEU][hapmap];0.83[CHB][hapmap];0.91[JPT][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7497429	0.88[CEU][hapmap];0.95[JPT][hapmap];0.96[YRI][hapmap];0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8032586	0.95[CHB][hapmap];0.85[JPT][hapmap]
rs8033644	0.87[CEU][hapmap];0.86[CHB][hapmap];0.85[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758386	chr15:72819785-73120560	Strong transcription ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
2	esv2760039	chr15:72819785-73120560	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
3	nsv428307	chr15:72819785-73120560	Strong transcription Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	55 gene(s)	inside rSNPs	diseases
4	esv3430383	chr15:72821093-73035167	Strong transcription Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:73 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:72979200-73023600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:72979200-73023600	Weak transcription	Lung	lung
3	chr15:72979400-73002000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
4	chr15:72979400-73002000	Weak transcription	Primary T helper cells fromperipheralblood	blood
5	chr15:72979400-73004400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
6	chr15:72979400-73006000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
7	chr15:72979400-73027200	Weak transcription	Aorta	Aorta
8	chr15:72979600-73002200	Weak transcription	Ovary	ovary
9	chr15:72979600-73004000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr15:72979600-73004200	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr15:72979600-73004600	Weak transcription	Primary B cells from cord blood	blood
12	chr15:72979600-73004600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr15:72979600-73023200	Weak transcription	Fetal Kidney	kidney
14	chr15:72979600-73026800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
15	chr15:72979800-73002000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
16	chr15:72979800-73004000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr15:72979800-73004400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr15:72979800-73007200	Weak transcription	Left Ventricle	heart
19	chr15:72979800-73027400	Weak transcription	Hela-S3	cervix
20	chr15:72980000-73002200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr15:72980000-73002200	Weak transcription	Fetal Stomach	stomach
22	chr15:72980000-73004000	Weak transcription	Fetal Muscle Leg	muscle
23	chr15:72980200-73004200	Weak transcription	Liver	Liver
24	chr15:72980200-73008000	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr15:72981000-73018600	Weak transcription	Pancreas	Pancrea
26	chr15:72985000-73003800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr15:72985200-73002000	Weak transcription	Fetal Lung	lung
28	chr15:72985200-73021000	Weak transcription	Fetal Intestine Small	intestine
29	chr15:72989000-73004000	Weak transcription	Brain Hippocampus Middle	brain
30	chr15:72989200-73001600	Weak transcription	A549	lung
31	chr15:72990400-73004400	Weak transcription	Primary T cells from cord blood	blood
32	chr15:72992200-73003000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
33	chr15:72992800-73004400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr15:72993000-73028800	Weak transcription	NHEK	skin
35	chr15:72995800-73002400	Weak transcription	Fetal Brain Female	brain
36	chr15:72996600-73002200	Weak transcription	Psoas Muscle	Psoas
37	chr15:72996600-73003800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr15:72996600-73005000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr15:72999000-73004600	Weak transcription	HSMM	muscle
40	chr15:72999000-73009600	Weak transcription	HSMMtube	muscle
41	chr15:72999000-73020400	Weak transcription	NH-A	brain
42	chr15:72999000-73021800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr15:72999000-73044000	Weak transcription	Small Intestine	intestine
44	chr15:72999200-73004400	Weak transcription	Skeletal Muscle Male	skeletal muscle
45	chr15:72999600-73027600	Weak transcription	NHLF	lung
46	chr15:72999800-73007600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr15:73000200-73002400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr15:73000200-73006800	Weak transcription	Osteobl	bone
49	chr15:73000400-73004400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr15:73000400-73004400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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