Variant report

Variant	rs11072475
Chromosome Location	chr15:74345103-74345104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:74334928..74336787-chr15:74343703..74345975,2	MCF-7	breast:

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11072473	0.98[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11072474	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12595546	0.93[AFR][1000 genomes];0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs28548701	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4886860	0.88[EUR][1000 genomes]
rs4886861	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4886867	0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7179827	0.98[AFR][1000 genomes];0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7180506	0.90[EUR][1000 genomes]
rs8024150	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8024467	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8029133	0.89[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758387	chr15:74215114-74464916	Enhancers Flanking Active TSS Bivalent/Poised TSS Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
2	esv2760040	chr15:74215114-74464916	Weak transcription Enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
3	nsv428308	chr15:74215114-74464916	Transcr. at gene 5' and 3' Enhancers Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv833052	chr15:74250378-74377150	Genic enhancers Enhancers Transcr. at gene 5' and 3' Strong transcription Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
5	nsv469619	chr15:74291859-74466321	Enhancers Weak transcription Genic enhancers Bivalent Enhancer Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv482362	chr15:74291859-74466321	Strong transcription Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
7	nsv457203	chr15:74308940-74347723	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
8	nsv569971	chr15:74308940-74347723	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
9	nsv510666	chr15:74310738-74394745	Enhancers Strong transcription Weak transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
10	nsv974597	chr15:74339226-74413654	Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:74327800-74346000	Weak transcription	Psoas Muscle	Psoas
2	chr15:74328600-74346200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr15:74334000-74346600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr15:74336200-74346200	Weak transcription	Brain Angular Gyrus	brain
5	chr15:74336800-74346000	Weak transcription	Brain Inferior Temporal Lobe	brain
6	chr15:74338200-74346000	Weak transcription	Fetal Brain Female	brain
7	chr15:74340800-74345800	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr15:74340800-74346000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr15:74340800-74346000	Weak transcription	Right Ventricle	heart
10	chr15:74340800-74346000	Weak transcription	GM12878-XiMat	blood
11	chr15:74340800-74346600	Weak transcription	Brain Anterior Caudate	brain
12	chr15:74340800-74346600	Weak transcription	Brain Substantia Nigra	brain
13	chr15:74341000-74345600	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr15:74341000-74346000	Weak transcription	Fetal Brain Male	brain
15	chr15:74341200-74346000	Weak transcription	Brain Cingulate Gyrus	brain
16	chr15:74341200-74346200	Weak transcription	Primary B cells from peripheral blood	blood
17	chr15:74341400-74346000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr15:74341400-74346000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
19	chr15:74341400-74346000	Weak transcription	Fetal Thymus	thymus
20	chr15:74341400-74346200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
21	chr15:74341400-74346200	Weak transcription	Thymus	Thymus
22	chr15:74341400-74346600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
23	chr15:74341400-74346600	Weak transcription	Primary T helper cells PMA-I stimulated	--
24	chr15:74341400-74346600	Weak transcription	Primary T helper cells fromperipheralblood	blood
25	chr15:74341600-74346200	Weak transcription	Primary T cells fromperipheralblood	blood
26	chr15:74341600-74346200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
27	chr15:74342200-74345400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr15:74342400-74345400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr15:74342400-74347000	Enhancers	Skeletal Muscle Male	skeletal muscle
30	chr15:74342600-74365400	Weak transcription	Spleen	Spleen
31	chr15:74343400-74346200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
32	chr15:74343400-74346600	Weak transcription	Pancreas	Pancrea
33	chr15:74343400-74350400	Weak transcription	Left Ventricle	heart
34	chr15:74343400-74351200	Weak transcription	Aorta	Aorta
35	chr15:74343400-74358000	Weak transcription	Gastric	stomach
36	chr15:74343600-74346000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr15:74343600-74346200	Enhancers	Skeletal Muscle Female	skeletal muscle
38	chr15:74343600-74346400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
39	chr15:74343600-74346600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr15:74343600-74347200	Enhancers	NHLF	lung
41	chr15:74344000-74345800	Weak transcription	Primary hematopoietic stem cells	blood
42	chr15:74344000-74345800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr15:74344200-74345800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr15:74344200-74346000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
45	chr15:74344200-74346000	Weak transcription	Esophagus	oesophagus
46	chr15:74344200-74346600	Weak transcription	Monocytes-CD14+_RO01746	blood
47	chr15:74344200-74350600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
48	chr15:74344400-74345400	Enhancers	Stomach Smooth Muscle	stomach
49	chr15:74344400-74345800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
50	chr15:74344400-74345800	Weak transcription	Fetal Lung	lung

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