Variant report

Variant	rs11072685
Chromosome Location	chr15:78179732-78179733
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11072667	1.00[EUR][1000 genomes]
rs11072684	0.84[AFR][1000 genomes]
rs74026821	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806097	chr15:77817889-78301377	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
3	nsv833062	chr15:78035206-78220358	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1833316	chr15:78081307-78328108	Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
5	nsv904426	chr15:78090630-78264164	Active TSS Enhancers Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
6	nsv904427	chr15:78129964-78251431	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
7	nsv976954	chr15:78153346-78255825	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
8	nsv1046383	chr15:78153850-78229596	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
9	nsv904428	chr15:78156238-78230906	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
10	nsv904429	chr15:78160362-78251431	Active TSS Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
11	esv3358231	chr15:78175897-78180095	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:44 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78171800-78181400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr15:78172200-78179800	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr15:78173200-78185600	Enhancers	Fetal Muscle Trunk	muscle
4	chr15:78173800-78186000	Enhancers	Fetal Muscle Leg	muscle
5	chr15:78176400-78181400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
6	chr15:78177200-78180200	Enhancers	Fetal Heart	heart
7	chr15:78178000-78181600	Weak transcription	Aorta	Aorta
8	chr15:78178000-78181600	Weak transcription	GM12878-XiMat	blood
9	chr15:78178000-78183400	Weak transcription	Spleen	Spleen
10	chr15:78178200-78181400	Weak transcription	Fetal Lung	lung
11	chr15:78178200-78181800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr15:78178200-78182400	Weak transcription	Fetal Intestine Small	intestine
13	chr15:78178200-78183200	Weak transcription	Fetal Brain Male	brain
14	chr15:78178400-78180400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr15:78179000-78180600	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr15:78179000-78182000	Enhancers	Hela-S3	cervix
17	chr15:78179000-78182200	Enhancers	Skeletal Muscle Male	skeletal muscle
18	chr15:78179000-78185000	Enhancers	HSMMtube	muscle
19	chr15:78179000-78188400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr15:78179200-78179800	Enhancers	Stomach Smooth Muscle	stomach
21	chr15:78179200-78180000	Enhancers	Fetal Stomach	stomach
22	chr15:78179200-78180000	Enhancers	Right Ventricle	heart
23	chr15:78179200-78180800	Enhancers	Adipose Nuclei	Adipose
24	chr15:78179400-78180000	Enhancers	Breast Myoepithelial Primary Cells	Breast
25	chr15:78179400-78180000	Enhancers	HMEC	breast
26	chr15:78179400-78180200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr15:78179400-78180600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr15:78179400-78180800	Enhancers	Placenta	Placenta
29	chr15:78179400-78180800	Enhancers	NH-A	brain
30	chr15:78179400-78180800	Enhancers	NHDF-Ad	bronchial
31	chr15:78179400-78182000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr15:78179400-78182200	Enhancers	Muscle Satellite Cultured Cells	--
33	chr15:78179400-78184400	Enhancers	HSMM	muscle
34	chr15:78179600-78180000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr15:78179600-78180000	Enhancers	Psoas Muscle	Psoas
36	chr15:78179600-78180000	Enhancers	Right Atrium	heart
37	chr15:78179600-78180600	Enhancers	Left Ventricle	heart
38	chr15:78179600-78180800	Enhancers	NHLF	lung
39	chr15:78179600-78180800	Enhancers	Osteobl	bone
40	chr15:78179600-78181600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
41	chr15:78179600-78181600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr15:78179600-78181800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr15:78179600-78182200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr15:78179600-78185000	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links