Variant report

Variant	rs11072733
Chromosome Location	chr15:78462403-78462404
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:78447884..78449517-chr15:78460468..78462889,2	K562	blood:
2	chr15:78448017..78449674-chr15:78461389..78463442,2	K562	blood:
3	chr15:78460946..78462466-chr15:78493777..78496351,2	K562	blood:
4	chr15:78461657..78464169-chr15:78466113..78468967,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000166411	Chromatin interaction
ENSG00000103740	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs11072735	1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12050483	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2304826	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28413000	0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs28470276	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs28599778	0.96[AFR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs28699018	0.87[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7180781	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8035724	0.86[CHB][hapmap]
rs9972590	1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];0.82[AFR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv948437	chr15:78435527-78504662	Strong transcription Bivalent Enhancer Weak transcription ZNF genes & repeats Genic enhancers Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78442800-78463400	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr15:78442800-78465600	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr15:78445800-78464000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr15:78446600-78465200	Strong transcription	Fetal Intestine Large	intestine
5	chr15:78446800-78466000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:78447000-78475200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
7	chr15:78447600-78464400	Strong transcription	Rectal Mucosa Donor 29	rectum
8	chr15:78448000-78463000	Strong transcription	Fetal Muscle Leg	muscle
9	chr15:78448000-78464200	Strong transcription	Liver	Liver
10	chr15:78448000-78465200	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr15:78448000-78465800	Strong transcription	Fetal Muscle Trunk	muscle
12	chr15:78448600-78465400	Strong transcription	Placenta	Placenta
13	chr15:78448800-78463000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
14	chr15:78448800-78464200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr15:78448800-78466600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr15:78449000-78467800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr15:78449400-78465200	Strong transcription	Rectal Mucosa Donor 31	rectum
18	chr15:78449800-78465400	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr15:78450000-78464600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr15:78450000-78465200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr15:78450000-78465200	Strong transcription	Osteobl	bone
22	chr15:78450000-78466200	Strong transcription	Left Ventricle	heart
23	chr15:78450200-78462800	Strong transcription	Skeletal Muscle Female	skeletal muscle
24	chr15:78450200-78464200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr15:78450200-78465200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:78450200-78465400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
27	chr15:78450200-78465400	Strong transcription	Sigmoid Colon	Sigmoid Colon
28	chr15:78450600-78465200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
29	chr15:78451000-78464400	Strong transcription	Adipose Nuclei	Adipose
30	chr15:78451000-78466200	Strong transcription	Duodenum Smooth Muscle	Duodenum
31	chr15:78451200-78467000	Strong transcription	Stomach Smooth Muscle	stomach
32	chr15:78451200-78467600	Strong transcription	Brain Cingulate Gyrus	brain
33	chr15:78451400-78464400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr15:78451400-78467200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
35	chr15:78451800-78462800	Strong transcription	Skeletal Muscle Male	skeletal muscle
36	chr15:78452200-78467400	Strong transcription	Brain Angular Gyrus	brain
37	chr15:78452200-78467400	Strong transcription	Brain Inferior Temporal Lobe	brain
38	chr15:78453400-78465200	Strong transcription	HUES6 Cell Line	embryonic stem cell
39	chr15:78453600-78464600	Strong transcription	HUES48 Cell Line	embryonic stem cell
40	chr15:78453600-78464600	Strong transcription	Colon Smooth Muscle	Colon
41	chr15:78453600-78467400	Strong transcription	Fetal Brain Female	brain
42	chr15:78454600-78467400	Strong transcription	Brain Substantia Nigra	brain
43	chr15:78454800-78465600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
44	chr15:78455600-78463000	Strong transcription	Brain Anterior Caudate	brain
45	chr15:78455600-78465000	Strong transcription	HSMM	muscle
46	chr15:78455800-78464800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr15:78455800-78465200	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
48	chr15:78456000-78464800	Strong transcription	HUES64 Cell Line	embryonic stem cell
49	chr15:78456000-78465200	Strong transcription	iPS-20b Cell Line	embryonic stem cell
50	chr15:78456400-78463800	Strong transcription	Fetal Intestine Small	intestine

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