Variant report

Variant	rs11072759
Chromosome Location	chr15:34156284-34156285
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs1044129	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11072760	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11634530	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12148517	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12913404	0.82[ASN][1000 genomes]
rs2303310	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs958192	0.85[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043046	chr15:33714908-34321330	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases
2	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
5	nsv568921	chr15:34046635-34247622	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
6	nsv1044844	chr15:34065524-34296829	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34121400-34158400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr15:34130800-34158600	Weak transcription	Brain Germinal Matrix	brain
3	chr15:34137400-34164200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr15:34139800-34156400	Weak transcription	Brain Inferior Temporal Lobe	brain
5	chr15:34139800-34164200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr15:34142400-34168600	Weak transcription	Esophagus	oesophagus
7	chr15:34143000-34165000	Weak transcription	Psoas Muscle	Psoas
8	chr15:34143400-34160400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
9	chr15:34143600-34164200	Weak transcription	Brain Angular Gyrus	brain
10	chr15:34145000-34158200	Weak transcription	Gastric	stomach
11	chr15:34145000-34161200	Weak transcription	Small Intestine	intestine
12	chr15:34145400-34156600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr15:34145600-34158200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr15:34145600-34158600	Weak transcription	HSMM	muscle
15	chr15:34145800-34158400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr15:34146400-34158200	Weak transcription	Sigmoid Colon	Sigmoid Colon
17	chr15:34146800-34164000	Weak transcription	Right Ventricle	heart
18	chr15:34147200-34162400	Weak transcription	Pancreas	Pancrea
19	chr15:34147400-34164200	Weak transcription	Cortex derived primary cultured neurospheres	brain
20	chr15:34148400-34156600	Weak transcription	GM12878-XiMat	blood
21	chr15:34148600-34158400	Weak transcription	Ovary	ovary
22	chr15:34148600-34159400	Weak transcription	Lung	lung
23	chr15:34149400-34165800	Weak transcription	Fetal Intestine Small	intestine
24	chr15:34149600-34157000	Weak transcription	Fetal Intestine Large	intestine
25	chr15:34149600-34158400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
26	chr15:34150200-34164000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr15:34150200-34164000	Weak transcription	Rectal Mucosa Donor 29	rectum
28	chr15:34150800-34167400	Weak transcription	Duodenum Mucosa	Duodenum
29	chr15:34151200-34157200	Strong transcription	Aorta	Aorta
30	chr15:34151400-34156400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr15:34151400-34158200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr15:34151400-34158200	Weak transcription	Placenta	Placenta
33	chr15:34151600-34161000	Weak transcription	Thymus	Thymus
34	chr15:34151800-34156600	Weak transcription	HSMMtube	muscle
35	chr15:34152000-34156600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr15:34152000-34164200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
37	chr15:34152400-34157600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
38	chr15:34152400-34157800	Weak transcription	Brain Hippocampus Middle	brain
39	chr15:34152400-34158000	Weak transcription	Placenta Amnion	Placenta Amnion
40	chr15:34152400-34161800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
41	chr15:34152400-34162400	Weak transcription	Spleen	Spleen
42	chr15:34152400-34167600	Weak transcription	Rectal Mucosa Donor 31	rectum
43	chr15:34152600-34156600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr15:34152600-34156600	Weak transcription	Liver	Liver
45	chr15:34152600-34158000	Weak transcription	Brain Anterior Caudate	brain
46	chr15:34152600-34160000	Weak transcription	Fetal Brain Female	brain
47	chr15:34152600-34164200	Weak transcription	H9 Cell Line	embryonic stem cell
48	chr15:34152600-34164200	Weak transcription	Brain Cingulate Gyrus	brain
49	chr15:34153200-34156400	Weak transcription	HUES64 Cell Line	embryonic stem cell
50	chr15:34153200-34156600	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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