Variant report

Variant	rs11072763
Chromosome Location	chr15:78724256-78724257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 40 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10851906	0.89[EUR][1000 genomes]
rs11072762	0.81[ASN][1000 genomes]
rs11072766	0.89[EUR][1000 genomes]
rs12101809	0.89[EUR][1000 genomes]
rs16969894	0.88[EUR][1000 genomes]
rs2036529	0.84[EUR][1000 genomes]
rs2036533	0.89[EUR][1000 genomes]
rs2568483	0.89[EUR][1000 genomes]
rs2568485	0.88[EUR][1000 genomes]
rs2568488	0.89[EUR][1000 genomes]
rs2568490	0.89[EUR][1000 genomes]
rs2568493	0.89[EUR][1000 genomes]
rs2568497	0.89[EUR][1000 genomes]
rs2568499	0.89[EUR][1000 genomes]
rs2656055	0.87[EUR][1000 genomes]
rs2656069	0.89[EUR][1000 genomes]
rs2656071	0.88[EUR][1000 genomes]
rs2656072	0.88[EUR][1000 genomes]
rs2656073	0.89[EUR][1000 genomes]
rs2656074	0.89[EUR][1000 genomes]
rs28480606	0.89[EUR][1000 genomes]
rs28511883	0.89[EUR][1000 genomes]
rs28602670	0.88[EUR][1000 genomes]
rs2869032	0.83[EUR][1000 genomes]
rs2869045	0.85[EUR][1000 genomes]
rs2869046	0.84[ASN][1000 genomes]
rs2915695	0.89[EUR][1000 genomes]
rs2938671	0.85[EUR][1000 genomes]
rs2938674	0.89[EUR][1000 genomes]
rs2958719	0.89[EUR][1000 genomes]
rs35031105	0.89[EUR][1000 genomes]
rs4436747	0.87[ASN][1000 genomes]
rs4887053	0.81[EUR][1000 genomes]
rs7174190	0.88[EUR][1000 genomes]
rs924840	0.88[EUR][1000 genomes]
rs958025	0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1627	chr15:78683761-78728604	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs11072763	IREB2	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78698200-78729800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78716400-78726200	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr15:78720800-78726400	Weak transcription	Primary monocytes fromperipheralblood	blood
4	chr15:78720800-78728400	Weak transcription	K562	blood
5	chr15:78721000-78726600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr15:78722200-78726200	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr15:78722400-78724400	Weak transcription	Liver	Liver

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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