Variant report

Variant	rs11072947
Chromosome Location	chr15:34399392-34399393
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10775220	0.85[AFR][1000 genomes]
rs12917199	0.85[AFR][1000 genomes]
rs2705351	1.00[YRI][hapmap];0.85[AFR][1000 genomes]
rs6495516	0.85[AFR][1000 genomes]
rs7162728	0.85[AFR][1000 genomes]
rs8027337	0.85[AFR][1000 genomes]
rs8041507	1.00[YRI][hapmap];0.85[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv903986	chr15:34394273-34421951	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34394600-34400400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr15:34395000-34402200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr15:34395000-34407200	Weak transcription	Fetal Muscle Trunk	muscle
4	chr15:34395200-34399600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
5	chr15:34395200-34401400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr15:34395400-34401600	Weak transcription	Stomach Smooth Muscle	stomach
7	chr15:34395400-34402000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr15:34395400-34403600	Weak transcription	Psoas Muscle	Psoas
9	chr15:34395400-34408400	Weak transcription	HSMMtube	muscle
10	chr15:34395600-34399400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr15:34395600-34399800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr15:34395600-34402200	Weak transcription	K562	blood
13	chr15:34395600-34403600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr15:34395600-34408200	Weak transcription	Fetal Muscle Leg	muscle
15	chr15:34395800-34401400	Weak transcription	HepG2	liver
16	chr15:34396000-34407200	Weak transcription	Skeletal Muscle Female	skeletal muscle
17	chr15:34397600-34399400	Weak transcription	Brain Inferior Temporal Lobe	brain
18	chr15:34397800-34403800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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