Variant report

Variant	rs11072954
Chromosome Location	chr15:34406816-34406817
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:34394473..34397367-chr15:34405065..34407483,2	K562	blood:
2	chr15:34391943..34394373-chr15:34406757..34408689,2	K562	blood:
3	chr15:34405220..34406883-chr15:34500622..34502410,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134152	Chromatin interaction
ENSG00000134153	Chromatin interaction
ENSG00000182405	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11634597	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11853879	0.85[EUR][1000 genomes]
rs11856158	0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12592403	0.94[ASN][1000 genomes]
rs12592547	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12592856	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12594048	0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12903028	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16958770	0.93[EUR][1000 genomes]
rs1865925	0.89[EUR][1000 genomes]
rs2339374	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2568532	0.93[EUR][1000 genomes]
rs2576308	0.93[EUR][1000 genomes]
rs2576310	0.87[EUR][1000 genomes]
rs28376576	0.95[EUR][1000 genomes]
rs3794593	0.91[EUR][1000 genomes]
rs4288968	0.82[EUR][1000 genomes]
rs4468578	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4780214	0.98[EUR][1000 genomes]
rs4780215	0.96[EUR][1000 genomes]
rs4780216	0.95[EUR][1000 genomes]
rs56310728	0.89[EUR][1000 genomes]
rs6495519	0.93[EUR][1000 genomes]
rs7161835	0.87[EUR][1000 genomes]
rs7163226	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7182085	0.90[EUR][1000 genomes]
rs721122	0.89[EUR][1000 genomes]
rs73374335	0.89[EUR][1000 genomes]
rs8028703	0.89[EUR][1000 genomes]
rs8038259	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456789	chr15:34034421-34426618	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv568920	chr15:34034421-34426618	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	nsv471235	chr15:34035529-34421951	Strong transcription Weak transcription Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
4	nsv1035579	chr15:34363159-34501115	Strong transcription Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
5	nsv903986	chr15:34394273-34421951	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	10 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:34395000-34407200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr15:34395400-34408400	Weak transcription	HSMMtube	muscle
3	chr15:34395600-34408200	Weak transcription	Fetal Muscle Leg	muscle
4	chr15:34396000-34407200	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr15:34406200-34411600	Enhancers	Placenta	Placenta
6	chr15:34406400-34407600	Enhancers	Liver	Liver

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links