Variant report

Variant	rs1107449
Chromosome Location	chr11:45612867-45612868
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1013700	0.93[ASN][1000 genomes]
rs10838489	0.97[ASN][1000 genomes]
rs1158404	0.82[ASN][1000 genomes]
rs1488682	0.97[ASN][1000 genomes]
rs1488683	0.86[AMR][1000 genomes];0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1488684	0.85[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1868098	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2166748	0.95[ASN][1000 genomes]
rs275596	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7127267	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs728516	1.00[CEU][hapmap];1.00[CHB][hapmap];0.91[CHD][hapmap];0.98[GIH][hapmap];1.00[JPT][hapmap];0.96[MEX][hapmap];0.95[TSI][hapmap];0.83[YRI][hapmap];0.83[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897310	chr11:45487041-45631953	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1107449	CHST1	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:45609400-45614000	Weak transcription	Fetal Brain Female	brain
2	chr11:45611200-45615400	Enhancers	Brain Germinal Matrix	brain
3	chr11:45611600-45613400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr11:45611600-45613400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr11:45611800-45615000	Enhancers	Fetal Brain Male	brain
6	chr11:45612200-45613000	Enhancers	Aorta	Aorta
7	chr11:45612200-45613000	Enhancers	Osteobl	bone
8	chr11:45612200-45613200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:45612600-45613000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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