Variant report

Variant	rs11075905
Chromosome Location	chr16:71851090-71851091
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:71842412..71844852-chr16:71850113..71852439,2	MCF-7	breast:
2	chr16:71842099..71845312-chr16:71845371..71851524,8	K562	blood:
3	chr16:71842293..71844591-chr16:71850006..71852078,2	K562	blood:

Variant related genes	Relation type
ENSG00000166747	Chromatin interaction

Extended variants
information (count: 50 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs11075901	0.90[CEU][hapmap]
rs11075904	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11862723	0.90[CEU][hapmap]
rs12929547	0.90[EUR][1000 genomes]
rs1392484	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1423983	0.90[CEU][hapmap]
rs2032918	0.90[CEU][hapmap]
rs2052585	0.95[CEU][hapmap]
rs2133773	0.91[EUR][1000 genomes]
rs2334877	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs4788444	0.83[EUR][1000 genomes]
rs4788548	0.85[CEU][hapmap]
rs4788550	0.85[CEU][hapmap]
rs4788553	0.85[EUR][1000 genomes]
rs4788557	0.87[EUR][1000 genomes]
rs4788559	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4788828	0.85[CEU][hapmap]
rs6499528	0.85[CEU][hapmap]
rs6499530	0.85[CEU][hapmap]
rs6499534	0.82[EUR][1000 genomes]
rs6499538	0.85[CEU][hapmap];0.81[EUR][1000 genomes]
rs6499540	1.00[CEU][hapmap];0.91[EUR][1000 genomes]
rs7186112	0.93[EUR][1000 genomes]
rs7188675	0.90[CEU][hapmap]
rs7195059	0.90[CEU][hapmap]
rs7201712	0.90[EUR][1000 genomes]
rs7202479	0.81[EUR][1000 genomes]
rs7204118	0.92[EUR][1000 genomes]
rs7204608	0.85[CEU][hapmap]
rs7204967	0.90[EUR][1000 genomes]
rs7206470	0.90[CEU][hapmap]
rs7359478	0.90[EUR][1000 genomes]
rs8044144	0.83[EUR][1000 genomes]
rs8052910	0.89[EUR][1000 genomes]
rs8053186	0.90[EUR][1000 genomes]
rs8055419	0.86[EUR][1000 genomes]
rs889568	0.81[EUR][1000 genomes]
rs9635524	0.84[EUR][1000 genomes]
rs979790	0.81[CEU][hapmap]
rs9929840	0.95[CEU][hapmap];0.91[EUR][1000 genomes]
rs9929985	0.94[EUR][1000 genomes]
rs9930015	0.95[CEU][hapmap];0.90[EUR][1000 genomes]
rs9934301	0.86[CEU][hapmap];0.82[EUR][1000 genomes]
rs9937511	0.92[EUR][1000 genomes]
rs9939458	0.91[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3347477	chr16:71555148-71985177	Weak transcription Active TSS Flanking Active TSS Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv948468	chr16:71727571-72651914	Enhancers Weak transcription Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	89 gene(s)	inside rSNPs	diseases
3	esv2522273	chr16:71851091-71851093	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
4	nsv97226	chr16:71851091-71851093	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
5	esv1929122	chr16:71851091-71851094	Enhancers Flanking Active TSS Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:71843600-71852600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr16:71843800-71851600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr16:71843800-71851600	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr16:71843800-71855400	Weak transcription	Primary T cells from cord blood	blood
5	chr16:71843800-71861600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr16:71844000-71859400	Weak transcription	Fetal Intestine Small	intestine
7	chr16:71844200-71862200	Weak transcription	Monocytes-CD14+_RO01746	blood
8	chr16:71844800-71862000	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr16:71845200-71851800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
10	chr16:71845600-71851600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr16:71846600-71851600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr16:71848600-71852200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr16:71849400-71851800	Enhancers	NHLF	lung
14	chr16:71849800-71851800	Enhancers	NHDF-Ad	bronchial
15	chr16:71850000-71851600	Weak transcription	Rectal Smooth Muscle	rectum
16	chr16:71850000-71851800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr16:71850200-71851200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr16:71850200-71852000	Enhancers	Primary B cells from peripheral blood	blood
19	chr16:71850200-71852200	Enhancers	Placenta	Placenta
20	chr16:71850400-71851200	Enhancers	Fetal Stomach	stomach
21	chr16:71850400-71851200	Enhancers	HUVEC	blood vessel
22	chr16:71850400-71851400	Enhancers	Fetal Muscle Trunk	muscle
23	chr16:71850400-71851800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
24	chr16:71850400-71851800	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
25	chr16:71850400-71852200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr16:71850400-71852200	Enhancers	Muscle Satellite Cultured Cells	--
27	chr16:71850600-71851200	Flanking Active TSS	Hela-S3	cervix
28	chr16:71850600-71851200	Flanking Active TSS	HepG2	liver
29	chr16:71850600-71851600	Enhancers	Primary T helper cells PMA-I stimulated	--
30	chr16:71850600-71851600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
31	chr16:71850600-71852000	Enhancers	Primary T cells fromperipheralblood	blood
32	chr16:71850600-71852000	Enhancers	HMEC	breast
33	chr16:71850600-71852200	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr16:71850800-71851200	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
35	chr16:71850800-71851200	Flanking Active TSS	GM12878-XiMat	blood
36	chr16:71850800-71851200	Enhancers	HSMM	muscle
37	chr16:71850800-71851200	Enhancers	HSMMtube	muscle
38	chr16:71850800-71851600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
39	chr16:71850800-71851600	Enhancers	Adipose Nuclei	Adipose
40	chr16:71850800-71852000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
41	chr16:71850800-71852000	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr16:71850800-71852200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr16:71850800-71852200	Enhancers	Skeletal Muscle Male	skeletal muscle
44	chr16:71851000-71851200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
45	chr16:71851000-71851200	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr16:71851000-71851200	Enhancers	Brain Cingulate Gyrus	brain
47	chr16:71851000-71851200	Flanking Active TSS	Stomach Smooth Muscle	stomach
48	chr16:71851000-71851200	Flanking Active TSS	NH-A	brain
49	chr16:71851000-71851400	Weak transcription	Brain Angular Gyrus	brain
50	chr16:71851000-71851400	Weak transcription	Brain Substantia Nigra	brain

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