Variant report

Variant	rs11077946
Chromosome Location	chr17:67103111-67103112
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:67103041..67104910-chr17:67106745..67108677,2	K562	blood:
2	chr17:67098233..67101602-chr17:67102782..67105641,3	K562	blood:
3	chr17:67101159..67103810-chr17:67103902..67105900,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs11656320	0.85[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12103556	0.85[CEU][hapmap]
rs12602766	0.84[EUR][1000 genomes]
rs12604047	0.83[EUR][1000 genomes]
rs12938420	0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs12945932	0.84[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs12948410	0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1468514	0.85[CEU][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs1860120	0.82[CEU][hapmap];0.84[EUR][1000 genomes]
rs2286419	0.86[EUR][1000 genomes]
rs2302289	0.82[CEU][hapmap];0.84[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs2886048	0.96[YRI][hapmap];0.87[AFR][1000 genomes];0.84[EUR][1000 genomes]
rs35991088	0.81[EUR][1000 genomes]
rs4968786	0.82[CEU][hapmap]
rs4968837	0.86[EUR][1000 genomes]
rs4968853	0.81[EUR][1000 genomes]
rs4968996	0.83[EUR][1000 genomes]
rs55821831	0.81[EUR][1000 genomes]
rs58452744	0.86[EUR][1000 genomes]
rs6502001	0.85[CEU][hapmap];1.00[YRI][hapmap]
rs6502002	0.82[CEU][hapmap];0.83[EUR][1000 genomes]
rs6502005	0.85[CEU][hapmap];0.96[YRI][hapmap];0.96[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7209351	0.85[CEU][hapmap];0.84[EUR][1000 genomes]
rs7212506	0.85[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs7212963	0.84[EUR][1000 genomes]
rs736528	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs7501583	0.84[EUR][1000 genomes]
rs8065842	0.86[EUR][1000 genomes]
rs8067965	0.85[CEU][hapmap];0.86[EUR][1000 genomes]
rs8068468	0.85[CEU][hapmap]
rs8080508	0.86[EUR][1000 genomes]
rs8081118	0.83[YRI][hapmap];0.86[EUR][1000 genomes]
rs8082114	0.85[CEU][hapmap];1.00[YRI][hapmap];0.87[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs9282553	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9282554	0.82[CEU][hapmap];0.86[EUR][1000 genomes]
rs9282555	0.86[EUR][1000 genomes]
rs9889289	1.00[CEU][hapmap];0.88[EUR][1000 genomes]
rs9896308	0.84[EUR][1000 genomes]
rs9904389	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv908705	chr17:67061898-67112456	Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases
5	esv1850212	chr17:67081732-67117428	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv470598	chr17:67081830-67212595	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67067200-67111600	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr17:67076800-67109800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
3	chr17:67077800-67137800	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr17:67079400-67112200	Strong transcription	Liver	Liver
5	chr17:67079400-67112600	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr17:67079400-67117600	Weak transcription	Esophagus	oesophagus
7	chr17:67079600-67114200	Weak transcription	NHDF-Ad	bronchial
8	chr17:67080800-67112000	Weak transcription	Brain Substantia Nigra	brain
9	chr17:67081400-67118600	Weak transcription	Right Ventricle	heart
10	chr17:67082200-67114400	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr17:67087000-67114600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr17:67087000-67130400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr17:67090400-67110000	Strong transcription	Adipose Nuclei	Adipose
14	chr17:67091200-67131400	Weak transcription	Fetal Muscle Trunk	muscle
15	chr17:67091600-67104400	Weak transcription	Left Ventricle	heart
16	chr17:67091600-67130000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr17:67092200-67137600	Weak transcription	Brain Anterior Caudate	brain
18	chr17:67095800-67131000	Weak transcription	Fetal Muscle Leg	muscle
19	chr17:67096200-67143400	Weak transcription	Psoas Muscle	Psoas
20	chr17:67096400-67104400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr17:67096400-67134000	Weak transcription	Stomach Smooth Muscle	stomach
22	chr17:67097000-67133800	Weak transcription	Colon Smooth Muscle	Colon
23	chr17:67097200-67105000	Weak transcription	Skeletal Muscle Female	skeletal muscle
24	chr17:67098600-67103200	Weak transcription	Fetal Lung	lung
25	chr17:67099000-67131600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
26	chr17:67100600-67107600	Weak transcription	Fetal Intestine Large	intestine
27	chr17:67101200-67110000	Weak transcription	Gastric	stomach
28	chr17:67101200-67143400	Weak transcription	Pancreas	Pancrea
29	chr17:67101400-67105800	Weak transcription	Ovary	ovary
30	chr17:67102000-67111200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr17:67102400-67107600	Weak transcription	GM12878-XiMat	blood
32	chr17:67102400-67108000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
33	chr17:67102600-67104400	Weak transcription	K562	blood
34	chr17:67102600-67111400	Weak transcription	Skeletal Muscle Male	skeletal muscle

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