Variant report

Variant	rs11078929
Chromosome Location	chr17:38140234-38140235
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:38136187..38139299-chr17:38140015..38144342,5	K562	blood:
2	chr17:38139958..38142841-chr17:38144945..38147813,2	MCF-7	breast:
3	chr17:38139548..38141921-chr17:38833362..38835168,2	K562	blood:
4	chr17:38137253..38140627-chr17:38150200..38152697,4	MCF-7	breast:
5	chr17:38138604..38140537-chr17:38144740..38146417,2	K562	blood:
6	chr17:38081395..38083587-chr17:38139253..38141219,2	K562	blood:
7	chr17:38140110..38141671-chr17:38147134..38149344,2	K562	blood:
8	chr17:38139951..38141671-chr17:38146998..38149344,2	K562	blood:
9	chr17:38135505..38137340-chr17:38139696..38141236,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000108344	Chromatin interaction
ENSG00000172057	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3916061	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv492308	chr17:38033039-38204458	Weak transcription Transcr. at gene 5' and 3' Active TSS Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	esv3380537	chr17:38140175-38140396	Weak transcription Genic enhancers Strong transcription Enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38137800-38140400	Weak transcription	Spleen	Spleen
2	chr17:38137800-38140600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr17:38138200-38140400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr17:38138200-38140600	Weak transcription	Aorta	Aorta
5	chr17:38138400-38140400	Weak transcription	Esophagus	oesophagus
6	chr17:38138400-38140400	Weak transcription	Pancreas	Pancrea
7	chr17:38138400-38140600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr17:38138400-38140600	Weak transcription	Left Ventricle	heart
9	chr17:38138400-38140600	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr17:38138600-38140400	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr17:38138600-38140400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr17:38138600-38140400	Weak transcription	Ovary	ovary
13	chr17:38138600-38140600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr17:38138600-38140600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr17:38138600-38140600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr17:38138600-38140600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr17:38138600-38140600	Weak transcription	Colonic Mucosa	Colon
18	chr17:38138600-38140600	Weak transcription	Gastric	stomach
19	chr17:38138600-38140600	Weak transcription	Small Intestine	intestine
20	chr17:38138600-38140800	Weak transcription	Fetal Brain Male	brain
21	chr17:38138600-38149200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr17:38138600-38154200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
23	chr17:38138800-38140600	Weak transcription	Stomach Mucosa	stomach
24	chr17:38139000-38140400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr17:38139000-38140400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
26	chr17:38139000-38140400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr17:38139000-38140400	Weak transcription	Stomach Smooth Muscle	stomach
28	chr17:38139000-38140600	Weak transcription	Primary neutrophils fromperipheralblood	blood
29	chr17:38139000-38140600	Weak transcription	Brain Anterior Caudate	brain
30	chr17:38139000-38140600	Weak transcription	Fetal Brain Female	brain
31	chr17:38139000-38140600	Weak transcription	HSMMtube	muscle
32	chr17:38139000-38140600	Weak transcription	NH-A	brain
33	chr17:38139000-38144400	Weak transcription	Fetal Heart	heart
34	chr17:38139200-38140400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr17:38139200-38140400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr17:38139200-38140400	Weak transcription	Brain Cingulate Gyrus	brain
37	chr17:38139200-38140400	Weak transcription	Colon Smooth Muscle	Colon
38	chr17:38139200-38140400	Weak transcription	Thymus	Thymus
39	chr17:38139200-38140400	Weak transcription	GM12878-XiMat	blood
40	chr17:38139200-38140600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr17:38139200-38140600	Weak transcription	Primary T cells from cord blood	blood
42	chr17:38139200-38140600	Weak transcription	Primary hematopoietic stem cells	blood
43	chr17:38139200-38140600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr17:38139200-38140600	Weak transcription	Muscle Satellite Cultured Cells	--
45	chr17:38139200-38140600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
46	chr17:38139200-38140600	Weak transcription	Brain Angular Gyrus	brain
47	chr17:38139200-38140600	Weak transcription	Brain Inferior Temporal Lobe	brain
48	chr17:38139200-38140600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr17:38139200-38140600	Weak transcription	Brain Substantia Nigra	brain
50	chr17:38139200-38140600	Weak transcription	Fetal Kidney	kidney

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