Variant report

Variant	rs11079458
Chromosome Location	chr17:59966741-59966742
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:59938914..59940731-chr17:59965314..59967517,2	K562	blood:
2	chr17:59458933..59460689-chr17:59966484..59968441,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000266934	Chromatin interaction
ENSG00000136492	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12602937	0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs2048718	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4968458	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56110140	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7215076	0.84[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs8067092	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8073307	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9890526	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59941400-59975000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr17:59941400-60004400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr17:59941400-60004400	Weak transcription	Aorta	Aorta
4	chr17:59941400-60004400	Weak transcription	Pancreas	Pancrea
5	chr17:59941600-59966800	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr17:59941600-59979600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr17:59941600-59987600	Weak transcription	Right Ventricle	heart
8	chr17:59941600-60003600	Weak transcription	Stomach Mucosa	stomach
9	chr17:59941600-60004400	Weak transcription	Colonic Mucosa	Colon
10	chr17:59941800-59967000	Weak transcription	Fetal Brain Male	brain
11	chr17:59941800-59968800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
12	chr17:59941800-59969200	Weak transcription	Pancreatic Islets	Pancreatic Islet
13	chr17:59941800-59971800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
14	chr17:59941800-59979200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
15	chr17:59941800-59979200	Weak transcription	Brain Angular Gyrus	brain
16	chr17:59942600-60002800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr17:59943600-59989600	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr17:59944400-59970000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr17:59944600-59967600	Strong transcription	HepG2	liver
20	chr17:59946600-59989200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr17:59947400-59977400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
22	chr17:59948000-59972600	Weak transcription	NHDF-Ad	bronchial
23	chr17:59948000-59981800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
24	chr17:59948200-59980600	Weak transcription	HMEC	breast
25	chr17:59948200-59986800	Weak transcription	Fetal Kidney	kidney
26	chr17:59949400-59966800	Weak transcription	NH-A	brain
27	chr17:59949800-59966800	Weak transcription	K562	blood
28	chr17:59949800-59967000	Weak transcription	Colon Smooth Muscle	Colon
29	chr17:59950000-59979200	Weak transcription	NHLF	lung
30	chr17:59950800-59968800	Strong transcription	Adipose Nuclei	Adipose
31	chr17:59950800-59981600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr17:59951000-59972400	Strong transcription	Breast Myoepithelial Primary Cells	Breast
33	chr17:59951400-59992200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr17:59951600-59989600	Strong transcription	Primary monocytes fromperipheralblood	blood
35	chr17:59952000-59969200	Weak transcription	HUVEC	blood vessel
36	chr17:59952000-59971600	Weak transcription	Primary hematopoietic stem cells	blood
37	chr17:59952800-59981400	Strong transcription	Primary T helper cells fromperipheralblood	blood
38	chr17:59953200-59968200	Strong transcription	Fetal Muscle Leg	muscle
39	chr17:59953200-59972200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
40	chr17:59953800-59985600	Weak transcription	Small Intestine	intestine
41	chr17:59954400-60003800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
42	chr17:59954600-59967000	Weak transcription	H1 Cell Line	embryonic stem cell
43	chr17:59954600-59984800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
44	chr17:59955200-59979600	Weak transcription	HSMMtube	muscle
45	chr17:59955600-59966800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
46	chr17:59955600-59968400	Strong transcription	Fetal Stomach	stomach
47	chr17:59955800-59971600	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr17:59956800-59970000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
49	chr17:59957600-59973200	Strong transcription	Liver	Liver
50	chr17:59957800-59971600	Strong transcription	Fetal Muscle Trunk	muscle

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