Variant report

Variant	rs11079823
Chromosome Location	chr17:46582625-46582626
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:46581860..46584451-chr17:57920963..57923173,2	MCF-7	breast:
2	chr17:46582101..46583693-chr17:46591339..46593282,2	MCF-7	breast:
3	chr17:46581475..46583827-chr17:46593469..46596750,3	MCF-7	breast:
4	chr17:46582615..46585067-chr17:46605741..46607260,2	MCF-7	breast:
5	chr17:46581827..46584181-chr20:55513887..55516591,2	MCF-7	breast:
6	chr17:46566753..46569471-chr17:46581683..46584279,2	MCF-7	breast:
7	chr17:46581684..46585389-chr17:46696226..46700293,4	K562	blood:
8	chr17:46569342..46572136-chr17:46582152..46585021,2	MCF-7	breast:
9	chr17:46582522..46585256-chr17:46587191..46589212,2	K562	blood:
10	chr17:46575874..46579148-chr17:46581240..46583659,4	MCF-7	breast:
11	chr17:46574112..46575706-chr17:46580959..46582706,2	MCF-7	breast:

No data

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12951158	0.93[AFR][1000 genomes]
rs4459585	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4794741	0.95[YRI][hapmap];0.97[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6416943	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6504322	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6504326	0.99[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6504339	1.00[EUR][1000 genomes]
rs7224409	1.00[EUR][1000 genomes]
rs7502340	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs8182315	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9893509	1.00[EUR][1000 genomes]
rs9901839	1.00[EUR][1000 genomes]
rs9906920	0.96[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833469	chr17:46491849-46709406	Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	349 gene(s)	inside rSNPs	diseases
2	esv3420538	chr17:46504944-46861553	Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	369 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:46574600-46588000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr17:46574800-46582800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr17:46574800-46582800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr17:46574800-46582800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr17:46578400-46582800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr17:46578600-46583000	Weak transcription	HSMMtube	muscle
7	chr17:46578800-46583000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr17:46578800-46583200	Weak transcription	NHLF	lung
9	chr17:46580200-46584600	Enhancers	Placenta Amnion	Placenta Amnion
10	chr17:46580800-46584000	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr17:46581600-46583400	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr17:46581800-46582800	Weak transcription	K562	blood
13	chr17:46582000-46583000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr17:46582000-46583000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr17:46582000-46583000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr17:46582000-46583000	Weak transcription	Fetal Stomach	stomach
17	chr17:46582000-46583200	Weak transcription	Colon Smooth Muscle	Colon
18	chr17:46582000-46583400	Weak transcription	Rectal Smooth Muscle	rectum
19	chr17:46582000-46584200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr17:46582200-46583200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr17:46582200-46583200	Enhancers	A549	lung
22	chr17:46582200-46584000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
23	chr17:46582400-46582800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
24	chr17:46582400-46583200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
25	chr17:46582400-46584400	Enhancers	HMEC	breast
26	chr17:46582400-46584600	Enhancers	GM12878-XiMat	blood
27	chr17:46582600-46583200	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr17:46582600-46584200	Enhancers	NH-A	brain
29	chr17:46582600-46584600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
30	chr17:46582600-46585000	Enhancers	HSMM	muscle

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