Variant report

Variant	rs11080359
Chromosome Location	chr17:34082253-34082254
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11650416	0.82[LWK][hapmap];0.85[YRI][hapmap];0.81[AMR][1000 genomes]
rs11654604	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs2306630	0.80[TSI][hapmap]
rs3809769	0.80[TSI][hapmap]
rs4796107	0.84[GIH][hapmap]
rs4796118	0.80[TSI][hapmap]
rs4796119	0.80[TSI][hapmap]
rs4796120	0.80[TSI][hapmap]
rs56019936	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9303691	0.80[TSI][hapmap]
rs9303692	0.80[TSI][hapmap]
rs9889874	0.80[TSI][hapmap]
rs9898132	0.80[TSI][hapmap]
rs9898152	0.80[TSI][hapmap]
rs9914401	0.80[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534371	chr17:33456878-34094068	Strong transcription Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	137 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs11080359	SLFN12	cis	parietal	SCAN
rs11080359	TAF15	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:34080200-34083000	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr17:34080600-34087400	Weak transcription	Skeletal Muscle Female	skeletal muscle
3	chr17:34082200-34082400	Enhancers	Pancreas	Pancrea

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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