Variant report

Variant	rs11081459
Chromosome Location	chr18:9107815-9107816
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:9089564..9091927-chr18:9106557..9108068,2	MCF-7	breast:
2	chr18:9101529..9104224-chr18:9106427..9108818,4	MCF-7	breast:
3	chr18:9105722..9108472-chr18:9137021..9138742,2	MCF-7	breast:
4	chr18:9099316..9108402-chr18:9132066..9139576,22	K562	blood:

Variant related genes	Relation type
ENSG00000101745	Chromatin interaction
ENSG00000266053	Chromatin interaction
ENSG00000265257	Chromatin interaction
ENSG00000178127	Chromatin interaction

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:43)

rs_ID	r²[population]
rs1034486	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs1046491	1.00[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];0.95[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs10502390	1.00[CEU][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs10853373	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11081463	0.84[ASW][hapmap];1.00[CEU][hapmap];0.80[LWK][hapmap];0.88[MKK][hapmap];0.92[TSI][hapmap];0.93[YRI][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11081469	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs11660889	0.89[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs11661901	0.86[CEU][hapmap];1.00[YRI][hapmap]
rs11661921	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs11663175	0.92[ASW][hapmap];1.00[CEU][hapmap];1.00[GIH][hapmap];0.86[LWK][hapmap];1.00[MEX][hapmap];0.87[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs11663949	1.00[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes]
rs11872176	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs11872481	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11875086	0.84[AMR][1000 genomes]
rs11876775	0.84[AMR][1000 genomes]
rs11876821	0.84[ASW][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.95[MKK][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs11877843	0.89[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs12454025	0.87[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12454497	0.88[CEU][hapmap];1.00[YRI][hapmap]
rs12454908	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs12454936	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12455304	0.92[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];0.90[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap]
rs12457266	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12457429	0.90[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12956041	0.87[GIH][hapmap]
rs12966444	0.92[ASW][hapmap];0.89[CEU][hapmap];1.00[GIH][hapmap];0.85[LWK][hapmap];0.93[TSI][hapmap];0.86[YRI][hapmap];0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12966775	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12968060	1.00[CEU][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs35002591	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35587943	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35774167	0.87[AMR][1000 genomes]
rs35849084	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs41274300	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6506641	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6506647	0.89[CEU][hapmap];1.00[YRI][hapmap]
rs7226632	0.89[CEU][hapmap];1.00[YRI][hapmap];0.84[AMR][1000 genomes]
rs7229685	1.00[CEU][hapmap];0.86[YRI][hapmap]
rs8085549	1.00[CEU][hapmap]
rs8085669	0.81[AMR][1000 genomes]
rs8086362	1.00[CEU][hapmap];1.00[YRI][hapmap]
rs8089577	1.00[YRI][hapmap]
rs8090297	0.97[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs8095601	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064883	chr18:8709670-9133224	Enhancers Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv431971	chr18:9081185-9326852	Flanking Active TSS Active TSS Enhancers Strong transcription Weak transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
4	nsv1056258	chr18:9094498-9181498	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9103000-9108000	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
2	chr18:9103000-9108000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr18:9103400-9111400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr18:9103400-9111600	Weak transcription	Pancreas	Pancrea
5	chr18:9103400-9113400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:9103400-9113400	Weak transcription	Spleen	Spleen
7	chr18:9103600-9108200	Transcr. at gene 5' and 3'	K562	blood
8	chr18:9103600-9110600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr18:9103800-9108000	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
10	chr18:9103800-9117000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr18:9104000-9108000	Transcr. at gene 5' and 3'	Dnd41	blood
12	chr18:9104400-9108000	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr18:9104400-9108000	Enhancers	Small Intestine	intestine
14	chr18:9104400-9116800	Weak transcription	Esophagus	oesophagus
15	chr18:9104400-9117000	Weak transcription	Lung	lung
16	chr18:9104400-9130000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr18:9104600-9111600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr18:9104600-9112200	Weak transcription	Fetal Muscle Trunk	muscle
19	chr18:9104800-9108000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr18:9104800-9108000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr18:9104800-9108200	Enhancers	Fetal Intestine Large	intestine
22	chr18:9104800-9110400	Enhancers	Brain Substantia Nigra	brain
23	chr18:9105000-9108000	Enhancers	Brain Inferior Temporal Lobe	brain
24	chr18:9105000-9108000	Enhancers	Fetal Intestine Small	intestine
25	chr18:9105000-9112600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
26	chr18:9105200-9108000	Enhancers	Adipose Nuclei	Adipose
27	chr18:9105400-9108000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr18:9105400-9108600	Enhancers	Primary hematopoietic stem cells	blood
29	chr18:9105600-9108600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
30	chr18:9105800-9108000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
31	chr18:9105800-9108000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
32	chr18:9105800-9108000	Enhancers	Fetal Lung	lung
33	chr18:9105800-9108000	Enhancers	Fetal Stomach	stomach
34	chr18:9105800-9108000	Genic enhancers	Hela-S3	cervix
35	chr18:9105800-9108400	Enhancers	Osteobl	bone
36	chr18:9106000-9108000	Genic enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr18:9106000-9108000	Enhancers	Brain Hippocampus Middle	brain
38	chr18:9106000-9108000	Enhancers	Left Ventricle	heart
39	chr18:9106000-9108200	Enhancers	Fetal Heart	heart
40	chr18:9106000-9109200	Weak transcription	HSMM	muscle
41	chr18:9106200-9108000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr18:9106200-9108000	Enhancers	Breast Myoepithelial Primary Cells	Breast
43	chr18:9106200-9108000	Enhancers	Aorta	Aorta
44	chr18:9106200-9108000	Enhancers	Brain Angular Gyrus	brain
45	chr18:9106200-9108000	Enhancers	Pancreatic Islets	Pancreatic Islet
46	chr18:9106200-9108000	Enhancers	Rectal Mucosa Donor 31	rectum
47	chr18:9106200-9108200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
48	chr18:9106200-9108600	Enhancers	Rectal Smooth Muscle	rectum
49	chr18:9106200-9108600	Genic enhancers	A549	lung
50	chr18:9106200-9110000	Enhancers	Primary T cells fromperipheralblood	blood

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