Variant report

Variant	rs11081759
Chromosome Location	chr18:29917348-29917349
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:29912040..29915183-chr18:29916652..29919648,4	MCF-7	breast:
2	chr18:29915109..29917928-chr18:29952038..29954321,2	MCF-7	breast:

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs3786309	0.90[CHB][hapmap];0.90[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833616	chr18:29792336-29964212	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:29868200-29923800	Weak transcription	Gastric	stomach
2	chr18:29897200-29918800	Weak transcription	Fetal Intestine Large	intestine
3	chr18:29897200-29926400	Weak transcription	Fetal Stomach	stomach
4	chr18:29897400-29923800	Weak transcription	Esophagus	oesophagus
5	chr18:29897400-29923800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr18:29898000-29918600	Weak transcription	Fetal Intestine Small	intestine
7	chr18:29904400-29930000	Weak transcription	Sigmoid Colon	Sigmoid Colon
8	chr18:29906800-29917800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr18:29906800-29922200	Weak transcription	Ovary	ovary
10	chr18:29906800-29923800	Weak transcription	Right Atrium	heart
11	chr18:29907800-29921800	Weak transcription	Liver	Liver
12	chr18:29909000-29917800	Weak transcription	HUES64 Cell Line	embryonic stem cell
13	chr18:29909200-29917600	Weak transcription	Stomach Mucosa	stomach
14	chr18:29910600-29929800	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr18:29912000-29918600	Weak transcription	Small Intestine	intestine
16	chr18:29912800-29918000	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr18:29912800-29923800	Weak transcription	Lung	lung
18	chr18:29913400-29918800	Weak transcription	Psoas Muscle	Psoas
19	chr18:29913400-29926600	Weak transcription	Aorta	Aorta
20	chr18:29914000-29923400	Weak transcription	Right Ventricle	heart
21	chr18:29914200-29918800	Weak transcription	Stomach Smooth Muscle	stomach
22	chr18:29914800-29917400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr18:29915000-29923400	Weak transcription	Fetal Muscle Leg	muscle
24	chr18:29915400-29917600	Weak transcription	Fetal Heart	heart
25	chr18:29915600-29929600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
26	chr18:29916000-29918600	Weak transcription	Left Ventricle	heart
27	chr18:29916000-29921800	Weak transcription	Pancreas	Pancrea
28	chr18:29916000-29923800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr18:29916000-29924000	Weak transcription	Brain Anterior Caudate	brain
30	chr18:29916000-29925000	Weak transcription	Brain Angular Gyrus	brain
31	chr18:29916000-29925000	Weak transcription	Brain Cingulate Gyrus	brain
32	chr18:29917200-29917600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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