Variant report

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10163703	0.81[AMR][1000 genomes]
rs11082285	0.85[AMR][1000 genomes]
rs11082287	0.85[AMR][1000 genomes]
rs11082288	0.85[AMR][1000 genomes]
rs11082289	0.85[AMR][1000 genomes]
rs11877822	0.83[AMR][1000 genomes]
rs12327031	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12454517	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12456487	0.84[AMR][1000 genomes]
rs12456690	0.84[AMR][1000 genomes]
rs12457363	0.83[AMR][1000 genomes]
rs12605774	0.81[AMR][1000 genomes]
rs12605791	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430907	0.85[AMR][1000 genomes]
rs1430909	0.85[AMR][1000 genomes]
rs1594433	0.85[AMR][1000 genomes]
rs16976497	0.85[AMR][1000 genomes]
rs16976532	0.83[AMR][1000 genomes]
rs16976733	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1943173	0.84[AMR][1000 genomes]
rs2099220	0.81[AMR][1000 genomes]
rs2163383	0.85[AMR][1000 genomes]
rs3861286	0.83[AMR][1000 genomes]
rs3910099	0.85[AMR][1000 genomes]
rs60850907	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs72895369	0.81[AMR][1000 genomes]
rs72895391	0.85[AMR][1000 genomes]
rs72895392	0.85[AMR][1000 genomes]
rs72897419	0.83[AMR][1000 genomes]
rs72897444	0.85[AMR][1000 genomes]
rs72897453	0.85[AMR][1000 genomes]
rs72897467	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs72899472	0.81[EUR][1000 genomes]
rs8084832	0.82[EUR][1000 genomes]
rs8092214	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447158	chr18:40045478-40320720	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv833632	chr18:40187679-40388058	Flanking Active TSS Weak transcription Active TSS Enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1056794	chr18:40197837-40688514	Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:40310800-40322400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr18:40315800-40320400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
3	chr18:40317000-40320400	Active TSS	ES-I3 Cell Line	embryonic stem cell
4	chr18:40317200-40320400	Active TSS	HUES6 Cell Line	embryonic stem cell
5	chr18:40317800-40322400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr18:40318200-40322400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr18:40318400-40320400	Weak transcription	H1 Cell Line	embryonic stem cell

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