Variant report

Variant	rs11082546
Chromosome Location	chr18:44204857-44204858
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1471394	0.97[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428355	chr18:44160181-44406285	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44201200-44206000	Enhancers	Primary hematopoietic stem cells short term culture	blood
2	chr18:44202400-44206000	Enhancers	Spleen	Spleen
3	chr18:44203400-44205000	Enhancers	Fetal Stomach	stomach
4	chr18:44203400-44205800	Enhancers	Fetal Heart	heart
5	chr18:44203800-44208600	Weak transcription	Brain Anterior Caudate	brain
6	chr18:44204000-44205000	Enhancers	Primary T helper naive cells from peripheral blood	blood
7	chr18:44204000-44205400	Enhancers	Dnd41	blood
8	chr18:44204600-44210000	Weak transcription	Fetal Brain Male	brain
9	chr18:44204800-44209600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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