Variant report

Variant	rs11083255
Chromosome Location	chr18:25759164-25759165
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	REST	chr18:25753848-25759305	H1-neurons	neurons:	n/a	chr18:25755466-25755484 chr18:25757352-25757365 chr18:25757917-25757930 chr18:25757156-25757166 chr18:25757884-25757897 chr18:25757531-25757544 chr18:25755471-25755480 chr18:25755465-25755485 chr18:25757535-25757544 chr18:25756837-25756850 chr18:25757251-25757259 chr18:25755425-25755438 chr18:25755469-25755482
2	NRF1	chr18:25757157-25759200	SK-N-SH	brain:	n/a	chr18:25758449-25758458 chr18:25758014-25758023 chr18:25757264-25757273

Variant related genes	Relation type
CDH2	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs17469385	0.82[CEU][hapmap];1.00[AMR][1000 genomes]
rs17536514	1.00[YRI][hapmap]
rs45524231	0.82[AMR][1000 genomes];0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761996	chr18:24866083-25818618	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv9622	chr18:25749905-26032816	Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3425660	chr18:25756154-25759202	Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Enhancers Weak transcription	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:25749800-25759200	Active TSS	Right Ventricle	heart
2	chr18:25752400-25759600	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr18:25752600-25759200	Active TSS	Right Atrium	heart
4	chr18:25753400-25759600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr18:25753600-25759200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr18:25754000-25759200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
7	chr18:25754200-25759600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
8	chr18:25754400-25759200	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr18:25754400-25759200	Active TSS	Brain Inferior Temporal Lobe	brain
10	chr18:25754600-25759400	Active TSS	ES-I3 Cell Line	embryonic stem cell
11	chr18:25756600-25759200	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr18:25756600-25760800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr18:25756800-25759200	Active TSS	HUES6 Cell Line	embryonic stem cell
14	chr18:25756800-25759600	Active TSS	Brain Germinal Matrix	brain
15	chr18:25756800-25759800	Active TSS	Fetal Brain Female	brain
16	chr18:25758400-25759200	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
17	chr18:25758400-25759200	Active TSS	Fetal Heart	heart
18	chr18:25758600-25759200	Flanking Active TSS	A549	lung
19	chr18:25758600-25763800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr18:25758800-25759200	Bivalent/Poised TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr18:25758800-25759200	Enhancers	Muscle Satellite Cultured Cells	--
22	chr18:25758800-25759600	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr18:25758800-25759800	Enhancers	Brain Substantia Nigra	brain
24	chr18:25758800-25762400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
25	chr18:25758800-25763200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr18:25758800-25763600	Weak transcription	Liver	Liver
27	chr18:25758800-25763600	Weak transcription	HepG2	liver
28	chr18:25758800-25763600	Weak transcription	HSMMtube	muscle
29	chr18:25759000-25759200	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
30	chr18:25759000-25759200	Flanking Active TSS	HUES64 Cell Line	embryonic stem cell
31	chr18:25759000-25759200	Flanking Bivalent TSS/Enh	iPS-18 Cell Line	embryonic stem cell
32	chr18:25759000-25759200	Enhancers	Dnd41	blood
33	chr18:25759000-25759200	Active TSS	NH-A	brain
34	chr18:25759000-25759200	Enhancers	Osteobl	bone
35	chr18:25759000-25759400	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
36	chr18:25759000-25759600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr18:25759000-25759800	Weak transcription	H9 Cell Line	embryonic stem cell
38	chr18:25759000-25763200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
39	chr18:25759000-25763600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
40	chr18:25759000-25763600	Weak transcription	HUVEC	blood vessel
41	chr18:25759000-25766000	Weak transcription	Brain Cingulate Gyrus	brain

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