Variant report

Variant	rs11084060
Chromosome Location	chr19:51716010-51716011
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs61730558	0.98[ASN][1000 genomes]
rs7253654	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8104110	0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066308	chr19:51680133-52103974	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv544049	chr19:51680133-52103974	Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
3	esv3327113	chr19:51714613-51728152	Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr19:51715000-51717200	Enhancers	Primary neutrophils fromperipheralblood	blood
2	chr19:51715200-51716800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr19:51715200-51719600	Weak transcription	Hela-S3	cervix
4	chr19:51715200-51721600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr19:51715400-51718600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr19:51715400-51729200	Weak transcription	Spleen	Spleen
7	chr19:51715800-51716400	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
8	chr19:51715800-51718200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
9	chr19:51716000-51716200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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