Variant report
| Variant | rs1108626 |
|---|---|
| Chromosome Location | chr11:17614539-17614540 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:4)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:4 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr11:17612630..17615852-chr11:17618211..17621966,5 | K562 | blood: | |
| 2 | chr11:17614076..17616630-chr11:18008858..18011445,2 | K562 | blood: | |
| 3 | chr11:17605717..17608224-chr11:17613045..17615760,2 | K562 | blood: | |
| 4 | chr11:17613851..17615852-chr11:17618266..17620129,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000129158 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:23)
| rs_ID | r2[population] |
|---|---|
| rs10832804 | 0.82[JPT][hapmap] |
| rs10832806 | 0.95[CEU][hapmap];0.86[EUR][1000 genomes] |
| rs10832816 | 0.96[CEU][hapmap];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes] |
| rs11024332 | 1.00[CHB][hapmap];0.93[ASN][1000 genomes] |
| rs11024333 | 1.00[CHB][hapmap];0.92[ASN][1000 genomes] |
| rs11024335 | 0.93[CHB][hapmap];0.92[ASN][1000 genomes] |
| rs11024337 | 0.87[CHB][hapmap] |
| rs11825556 | 0.85[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs2214945 | 0.85[CEU][hapmap] |
| rs7116393 | 0.84[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs7118953 | 0.92[ASN][1000 genomes] |
| rs7126777 | 1.00[CHB][hapmap];0.92[ASN][1000 genomes] |
| rs720459 | 0.84[CEU][hapmap];0.89[EUR][1000 genomes] |
| rs720460 | 0.96[CEU][hapmap];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes] |
| rs734640 | 0.96[CEU][hapmap] |
| rs734641 | 0.93[CHB][hapmap] |
| rs757982 | 0.88[CEU][hapmap] |
| rs757983 | 0.92[ASN][1000 genomes] |
| rs757984 | 0.93[CHB][hapmap];0.90[ASN][1000 genomes] |
| rs7936484 | 1.00[CHB][hapmap];0.92[ASN][1000 genomes] |
| rs7937487 | 0.96[CEU][hapmap];0.89[AMR][1000 genomes];0.96[EUR][1000 genomes] |
| rs7938781 | 1.00[CHB][hapmap];0.92[ASN][1000 genomes] |
| rs7947947 | 0.86[CHB][hapmap];0.90[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1040065 | chr11:17556031-17753467 | Enhancers Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 10 gene(s) | inside rSNPs | diseases |
| 2 | nsv1044126 | chr11:17557715-17730646 | Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 3 | nsv540953 | chr11:17557715-17730646 | Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
